RNA id: TCONS_00035935


Basic Information

Item Value
RNA id TCONS_00035935
length 830
lncRNA type retained_intron
GC content 0.32
exon number 4
gene id XLOC_018245
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 35517572 ~ 35536676 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGTTCATAAAGATTTTGGAGTGTTGACTAGCAGACATTTTGTCGAAAGAATTACCAGTGTCAGTTCTTAATTTTCTTACTGGTTTCCAGCTTAAACTTGTGATATCTGAAGCTATAATTGAACTGATGTTGACTTTGTACTTGACTGCACAACATGGCGAGTAAAGATGCACGGACAGTATTAAAATACCTGTTAGGATTCCAAATAGCTATCCTGCTTACCCAGttaaatagCAAAGATGGGACACAGAATCATATAAGAGAAAGAAGCACAGGTGTTCAGGAATGTCCTGGGCTCATTAATGGACCAAGGGATCATTTTAACTGTTACAAAGGTGAGTGTTTCTGCAATTTCTCAAATTGTCCCTCTCCTCTATCTTTATGTGATATAGCAGCTATAGTAAATATAACATCCAGGAAGACGAAGTCAAATCTGAGAGATCCCTTAACCCACTGTTAgtctgtacaattttaaaaatttaaatgcagGAAAAATTATCTGtatgtgaaatttaaaaaaaatgagagtaaagaaaattcaattaaaaatgttaCCATCTTAAAATGCTATAGTAGGTTTATACATTGCAAAGACACCAATCTTTCAAAGTTTATTGAAAATAATGTATGACCTGAAGATAAATTTCATGTGGGTTTGGAGTGACATGAAGGATAAATTACctacaattttaattttggggttaacagacattttaagaaaaaaaagtgttatgaGCGTTagtttgtacagtattgccaaagcattatgtaagatatgtaatatattaacatcatcaaattaataaaatatacagtgaagaaataaatta

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-165 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to several human genes including ADGRF1 (adhesion G protein-coupled receptor F1); ADGRF2 (adhesion G protein-coupled receptor F2); and ADGRF4 (adhesion G protein-coupled receptor F4).

Ensembl:

ensembl_id ENSDART00000153422

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035930 lncRNA downstream 64095 35469426 ~ 35471079 (-) True XLOC_018242
TCONS_00035922 lncRNA downstream 541051 34991671 ~ 34994123 (-) True XLOC_018238
TCONS_00036898 lncRNA downstream 884513 34645947 ~ 34650661 (-) False XLOC_018231
TCONS_00035907 lncRNA downstream 884541 34647500 ~ 34650633 (-) True XLOC_018231
TCONS_00036897 lncRNA downstream 999155 34515508 ~ 34536019 (-) True XLOC_018230
TCONS_00036486 lncRNA upstream 23981 35560657 ~ 35563832 (-) True XLOC_018248
TCONS_00036487 lncRNA upstream 691752 36228428 ~ 36228747 (-) True XLOC_018254
TCONS_00035950 lncRNA upstream 882823 36419499 ~ 36424577 (-) False XLOC_018257
TCONS_00035955 lncRNA upstream 1138891 36675567 ~ 36679222 (-) False XLOC_018259
TCONS_00035956 lncRNA upstream 1139744 36676420 ~ 36679204 (-) False XLOC_018259
TCONS_00035931 mRNA downstream 22242 35495687 ~ 35512932 (-) False XLOC_018243
TCONS_00035932 mRNA downstream 26369 35500044 ~ 35508805 (-) True XLOC_018243
TCONS_00035928 mRNA downstream 64180 35461736 ~ 35470994 (-) False XLOC_018242
TCONS_00035929 mRNA downstream 64283 35468260 ~ 35470891 (-) False XLOC_018242
TCONS_00035927 mRNA downstream 289024 35208855 ~ 35246150 (-) True XLOC_018241
TCONS_00035937 mRNA upstream 14960 35551636 ~ 35557902 (-) False XLOC_018247
TCONS_00035938 mRNA upstream 15090 35551766 ~ 35554451 (-) True XLOC_018247
TCONS_00035939 mRNA upstream 31876 35568552 ~ 35578435 (-) False XLOC_018249
TCONS_00035940 mRNA upstream 40063 35576739 ~ 35706379 (-) True XLOC_018249
TCONS_00035941 mRNA upstream 182699 35719375 ~ 35750810 (-) True XLOC_018250
TCONS_00035933 other downstream 24194 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035911 other downstream 828602 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035885 other downstream 1583484 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 1833941 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035879 other downstream 1846575 33657334 ~ 33688599 (-) False XLOC_018209
TCONS_00035936 other upstream 4606 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035984 other upstream 2394011 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 2982021 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00036007 other upstream 3368855 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00036008 other upstream 3496145 39032821 ~ 39032936 (-) True XLOC_018289

Expression Profile

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