RNA id: TCONS_00036486


Basic Information

Item Value
RNA id TCONS_00036486
length 2281
lncRNA type inter_gene
GC content 0.54
exon number 4
gene id XLOC_018248
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 35560657 ~ 35563832 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaccacaacgatcactctcagctcggcgccatattatgggaatcaaaagatgaagattacagtacaaattgcgaacgtgcacaaagctttccccaatgtggacacacaggtttacagctcaacctctaaagtcccatatctggctgaggagactgtggatcatccagaacatcaccagtggaaaaaaggtgtgaatgcatcctcaaagcccctaagtgagggagtacatggatgctgggcatgatgaagcgcaaaccttgatgtgcaacaccaccttatgaatctacactagttacattaacatttagcagactcttttgtctaaagtgacttacaattgaggacacattcagcaaatcaacaagaaaaggcgatacacccaagatgtgctaattatacaaaaaaatgtaagaattaagaatgcttctTAATGCGACTTGCGCGCCCAGTCGTCCAGCTAATCTAAGTTTTTGCCTTCTCCTCGGAAGGACCCCCGTCTAACGCCGTAGTCCGAAGGGCGCTGAATAGAACGCACTCCCGTGGCCCCTGTGGCAGCGTTAGAAGCTTCACAAAGGGCCGCACGTTGTTGCGGTGCCGGGAGTGGTTCATAAGCCTTCCGAAGGTTTCCATGCCCGGGTGACAGGGGCAGGGCCAGGACTGGGCATCCAGGCAAAGGGTCCTCCCACCAAGCCCTTTAAAGAAATACATGTAGGAGGAGGAGACACGGGGGAGGGCCTCCCGTCTCCTTAAGCCCTCCTCGTGCGACAACTCCTCCCCATGGTAATCACAAATAATTTCTCCTTTTTTAAAGAGCATGGTGGTGACGACTCCTCCGCCTTTGTCCCCAACGGTCTGGATCTCCAGTCCTTTCCAAGACTGCTGGACCACCGACATGACCAGCTGCTGGTCACTGGTGACGGCGGACAGCGCCCTCGAGAGCTCCCACTCTGCCAGGACGCCGTCCACCGTCGGCACGCCGGTGGTCCATGCAGTCTCGGCCCTAATGGCACTCTGCACCCGGGCCTGGGATGGCTTCCGGCCCTTCCGGTCGCTGCACCGCTCAAGGAGATGGCGCGTCCGGATTCCGAGCTGCTCCCCCCTCCAGTGATGGTAGTAGCCACGGTCGGTGAACCCGATCGCGGCTGCCTCCGCCCTACTGGGGGGCTTCCCACCCAAGCCTACCGGAAACTTGTCCTGAAAAGCCCCCCAATAACGAGGCGGAGGCACTGGAGGGGGCTGCAGGCCAGAGGTGGACGGCCTCTCCTCGCCAGGTGGAGCAGGCGGCTGAGACAGTGCAGCTGGAGGAGAAGCCGAAGCTGGAGCCGGAGGAGAAGACATAGACGCGGGGGTAGCGGGCGGCACGGGCTGCCTCTTGACGTACTTTGCTTTCAGGACGTCCTGGCTGGGTTAGTGAGGGGGAGTCCTGACGCTCCCAGGAAGAAGCATCCCTTTTCCTCTGCCCCCGAAGCCCGAGCCCTAAGGCAGAGCGGCCGGATGTGCCTGTAATAGCATTCCAGCCACTCCTTCTCTTTCCGGCTCAGGCTCACGGTTTTCCCGTGAAGCGTCAGGATTACAGCCTCTCCCTCTGGCCGCCTGCCCAGCCACTCCCGCACCCTAAGCTCCATGACGCTTCCAGGACCCAGACGGTGTAGCCACATTAGAGTGGCAACGCAGAAGCTGCGAAAATCCGTCTGGGTCCTGGGAGGCAGCTCGCACCGCTGGCCGAGGCGAAGGGAGACCTCAGCCATATCCGCCTCCATAGTGGACGGACATGGACTTTTGCTGCCGCTGCTGAGTGTAATATGCTGCTCCGCGACGAGGAAGACAAGGCCCCGCACCTCCGCCAGGCCTACCACCCTCCCCTCTGTGACAAACCTGGCGCGCGACTCCAAGGCACGAGCCACCTCCTCCAGGACCAGGGCCTCCTCAGCGCCGCTCATGCAGACCTGCCTCAAGTGCCCTGAGAGTTCCTTCTGAACCGTCAGGCACCCGAGGCAGTGTACAGCAACGCTATGGTCAGTGTTGTCCATCGTCGTTTCGAAATAGTTACCTCAGGTCGACACGGTGGGTGGAGTCGTaagcatattttttaaatcatttattgttttcaatttatttcatactttgattactattattttattagtattaatgttttaacttattgtaataagtgaagatacagataaagacagtatttggattttgacaatcattttattgctggaaaatgtgtaaatctgtaaaaatgctattgaataaactcaatgaaacggaaaa

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0010604 positive regulation of macromolecule metabolic process biological_process
GO:0001706 endoderm formation biological_process
GO:0048732 gland development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0010628 positive regulation of gene expression biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0072359 circulatory system development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0010646 regulation of cell communication biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0051173 positive regulation of nitrogen compound metabolic process biological_process
GO:0048785 hatching gland development biological_process
GO:0048513 animal organ development biological_process
GO:0003401 axis elongation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0090036 regulation of protein kinase C signaling biological_process
GO:0048522 positive regulation of cellular process biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0045165 cell fate commitment biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0009893 positive regulation of metabolic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031325 positive regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0030509 BMP signaling pathway biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0048583 regulation of response to stimulus biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0051254 positive regulation of RNA metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0010470 regulation of gastrulation biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0023051 regulation of signaling biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0009966 regulation of signal transduction biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0045935 positive regulation of nucleobase-containing compound metabolic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0060026 convergent extension biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0071772 response to BMP biological_process
GO:0071773 cellular response to BMP stimulus biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035935 lncRNA downstream 23981 35535174 ~ 35536676 (-) True XLOC_018245
TCONS_00035930 lncRNA downstream 89578 35469426 ~ 35471079 (-) True XLOC_018242
TCONS_00035922 lncRNA downstream 566534 34991671 ~ 34994123 (-) True XLOC_018238
TCONS_00036898 lncRNA downstream 909996 34645947 ~ 34650661 (-) False XLOC_018231
TCONS_00035907 lncRNA downstream 910024 34647500 ~ 34650633 (-) True XLOC_018231
TCONS_00036487 lncRNA upstream 664596 36228428 ~ 36228747 (-) True XLOC_018254
TCONS_00035950 lncRNA upstream 855667 36419499 ~ 36424577 (-) False XLOC_018257
TCONS_00035955 lncRNA upstream 1111735 36675567 ~ 36679222 (-) False XLOC_018259
TCONS_00035956 lncRNA upstream 1112588 36676420 ~ 36679204 (-) False XLOC_018259
TCONS_00035957 lncRNA upstream 1113091 36676923 ~ 36677772 (-) True XLOC_018259
TCONS_00035937 mRNA downstream 2755 35551636 ~ 35557902 (-) False XLOC_018247
TCONS_00035938 mRNA downstream 6206 35551766 ~ 35554451 (-) True XLOC_018247
TCONS_00035934 mRNA downstream 23989 35517572 ~ 35536668 (-) False XLOC_018245
TCONS_00035931 mRNA downstream 47725 35495687 ~ 35512932 (-) False XLOC_018243
TCONS_00035932 mRNA downstream 51852 35500044 ~ 35508805 (-) True XLOC_018243
TCONS_00035939 mRNA upstream 4720 35568552 ~ 35578435 (-) False XLOC_018249
TCONS_00035940 mRNA upstream 12907 35576739 ~ 35706379 (-) True XLOC_018249
TCONS_00035941 mRNA upstream 155543 35719375 ~ 35750810 (-) True XLOC_018250
TCONS_00035942 mRNA upstream 234166 35797998 ~ 35841570 (-) True XLOC_018251
TCONS_00035943 mRNA upstream 502576 36066408 ~ 36107422 (-) True XLOC_018252
TCONS_00035936 other downstream 15463 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035933 other downstream 49677 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035911 other downstream 854085 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035885 other downstream 1608967 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 1859424 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035984 other upstream 2366855 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 2954865 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00036007 other upstream 3341699 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00036008 other upstream 3468989 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036068 other upstream 5198480 40762312 ~ 40766351 (-) False XLOC_018321

Expression Profile

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