RNA id: TCONS_00035943


Basic Information

Item Value
RNA id TCONS_00035943
length 4604
RNA type mRNA
GC content 0.47
exon number 3
gene id XLOC_018252
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 36066408 ~ 36107422 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATCAGGGGGAGGGATGGAACCTAAAAGCCTCTATAGTGATCAATATCTGACTGTCTTGTTGCAAATCGCTGCAGTGCTTCACAGGTGTACACTCGAGTATTCTCATACGGATTGACTGAACTGGAGCCACATGTCACATGTGCTTCATAGGAAGAACCGGGGCATCATCTGCTGCAAGCTGGATCTGGAGGAGGATGCTGCGGCAAGTGATACACAGAGGGCTGAAAGCTTCCTTCTACTGGCTGGGTTTGTTCGTGAGCAGGCATCCGGTGTTCTTCCTCACCGTCCCCGCAGTCCTGACCATCATTTTCGGATCCACGGTGCTGAGCCGCTTTAAGCCCGAAACGGACCTGGAGATCCTGGTCGCCCCGACGCACAGCCTCGCGAAGATCGAGCGGAGTCTCGCCAACAGCCTCTTCCCCATCGACCAGTCCAAGCACAAGCTGTACTCGGACCTGCACACCCCCGGCAGATATGGCAGACTCATTCTGCTGGCCAGATCCGGGGGAAATATCTTGGAGCTGGCCGAGCAGGTGCTCCAGGTGCACAAGAAGGTCCTGGATATGCGTGTCAATTATAAAGGCTTCAATTACACTTTCGCGCATCTCTGTGTCCTGAGGCACCGGGACAAGAGATGCCTGTTGGATGATATCATCACCATATTTGAAGACATTCGCTTAGCTGTTTTGTCTAACAGCACTTTTTCCAAGGTCCCCGTGAGCTATCCGAACACGACGTTAAAGGATGGTCGGGTGTCCTTTATTGGCCATCAGCTGGGCGGTGTGGCCTTGCCCGCAAATAACCGGGACCAACAGGTCAAGTTTGCTCGCGCCATCCAAATCACCTACTACCTCCGTAACCTTGGCCCAGTGGTGCAGGACATCATTGCTGAGAAGTGGGAGACTGAATTCTGTAAGCTGGTGCACCAACTGGCTACAGACAGCCAGGAACTACACATCCAGTCTCTCACGTCCTTCAGCTTATGGCGGGACTTCCACAAGACAGGCGTATTGGCCAAGAGCGAGGTGCTGGTCAGCTTGGTGCTGGTGCTCTTGGCAGCCACCATCTCCAGCTCCATGCGGGACTGCTTACGCGGAAAGCCCTTTCTGGGCCTGTTGGGCGTCCTCACCATCTGCATCGCCAACGTGACGGCAGCTGGGATTTTTTTCATCTCTGATGGGAAATTTAACTCTACGCTGCTCGGGATCCCCTTTTTTGCCATGGgacATGGGACGAAGGGTGTGTTTGAGCTTCTGGCAGGCTGGAGAAGAACCAGAGAGAGTTTGCCCTTCAAGGAGAGAGTGGCGGATGCGTTTgctgatgtgatggtgtgctacACTATGACCAGCTCGCTCTACATAATCACCTTCGGCATGGGCGCCAGTCCTTTCACCAACATTGAGTCTGTGAAAGTCTTTTGCCAGAGCATGTGTGTAGCAGTACTGGTTAACTACTTTTATGTATTCTCCTTCTACGGCTCCTGCCTGGTGTTTGCCGGGCAGCTGGAGCAAAACCGATATCACAGCGTCTTCTGCTGCAAGATCCCCTCAGTGGAGTATCTGGACCGCCAGCCCACTTGGTTTAAGACCATGATGAGCGACGGCCATGATCTGTCTACACACCACGACAGTGTCCCGTACCAGAACCACTTCATTCAGCACTTCCTAAGGGAGCATTACACAGAATGGATAACCAACACCTACGTCAAGCCTTTTGTGGTGATCCTCTACCTGATTTATGCCTCGTTTTCGTTCATGGGATGTTTACAAATCAGCGACGGCTCGAACATAATTAACCTGCTAGCTAGCAATTCGCCCAGTGTGTCGTTTGCCCTGACCCAGCAGAAATACTTCAGCAACTACAGTCCTGTGATTGGGTTTTACATCTACGAACCCATCGAATATTGGAACTCCACAGTACAGGAGCACCTCAAGACACTGGGACAGGGCTTTAATAAGATTTCCTGGATCGATAATTACTTTCACTTTCTGAGGGTTGTGAATATTAGCGCGTCCACCAAAAGTGACTTCATTAGCATCCTTAAAACTTCTTTCCTGAGGAGCCCAGAATATCAACACTTTGTGGACGACATCATTTTCTCCAAAAACGGAGCCGAGTATGACATTATTGCATCCAAGATGTACTTGGTGGCCAGAACGACCGAAAAAACCAGGGAGGAGGTCGTGGAGCTGCTGGAGAGACTTCGACCCCTCTCCCTTATAAACAGCATCAAGTTCATCGTTTTCAACCCAACGTTTGTGTTCATGGACCGCTACAGTTCCTCCATCATCTCTCCAATCCTGACGTCAGGTTTCAGCGTGCTCACCATTCTCATCCTCACCTTCTTCCTGGTCATCAACCCGCTGGGGAACTTCTGGTTGATCCTGACCGTCACCTCCGTGGAGTTGGGCGTCTTGGGTCTTATGACGCTCTGGAATGTAGACATGGACAGCATCTCAATCCTGTGCCTTATTTATACTCTCAACTTTGCCATGGATCACTGTGCCCCCCACCTCTACACGTTCGTACTGGCCACTGAGCACACACGGACTCAGTGCATCAAGATCTCTTTAGAGGAGCATGGGGCTGCCATTTTGCAGAACACCTCGTGTTTTGTGATTGGGATAATGCCTCTTCTTTTTGTGCCTTCTAACCTGACCTACACACTGTTCAAGTGCTCGCTTCTCACCGCCGGCTGCACAGTGCTGCACTGTTTCGTCATCCTTCCGGTGTTTTTGACATTCTTCCCACCCTCCAAGAAGCGCCACAAGAAAAAGAAACGGGCCAAGCGGAAAGAGCGGGAAAGGGAGAGAGAgcgggagagggagagagaggagatCGAGTGCATTGAAGTCAGGGAAAACCCAGACCATGTGACCAATGTTTGATTGAAAGGCATGTGTGAGCGTAAGTGGTAAGAAATCAGCTCCTGTCCACAAGGGGGCGATGTCAGTCAGCACTTCACAGGTCCAGAGGTGGCCGAGTCCGGCACTATCTGCCCTGGGGGTGACCCCCAGTAATCCACAACAGTGCTGTCCAAACCCATCTTAGTCATTTCTTGTGCACCCTATATTCAGAACAGTGTATAACATCTGCAGCTGCTAGCTTACGTTAGCCGTTAACATGAAAGGTTTGCGCAAGAATGTTGTCTGTGTACATGAACTAAATCAAAACAGCTAAACAGAAAGCCTCTTAAAATGTTAGCATGAATCCGAGCAGGTGATTTCCTGCTTATTTGCGATCTCTAGTGAAGAATCCCAAGGGTTTTCATGTGTTTTGTAAGAGCAGATATCACAGCCATCTAAATTTGCTCTTGGTTAGCACTAACACGATTCTTTTTGATCACTCTTCAGTTTTTCTAACTGTTATGCACCTCACATTCCCCAAGCCTTGCGCTTACATAATTAATCaactctgtttaaaaaaaaaataaagctatgTGAAAACAGTAGCGAACGGAAGTAGCACTTTTCAGCATCCATCAAATTATGCAACACTCTTCTACAAATAACACTTGGCATGCATTTATCACAAATGTCCTGTAGCAAATCTAATACTCTGTTTGCAATCTCTGGTAGCAGTAACTTAGACTCTGAGAAACTGAGAGGTCCCACCTTATATCTGGAAAATATCCTCAGAGCAAAGCATCAATGGTCAATAGAATGGATTAATAATAACtggaaaacatgttttttttttcttcttagaaTGTTCAGTAAAATACATTATCCAATCTGACATTTAGCTGATATTCAGACTGTAATTTGTTTTACTCTTCCTAGTAAACAAACTGCATCTGAAAGTGCTTTATGTGGAGGCCTCTTACATGAATCACTAAAATGTTTTGCGTATAATATTGAACTGCATATGCCATTTAgaaaaaatgttttctaaaacatCCGAGTGGCTCATTCATGAGAAAAGAGACTTGTAGCATGTCGTACAGCTGCGTTGGTATGGTCTgttgtttatttgcttgtttgtttgtctgtcacAAAACCTGTTCATGCAGTTAAACTGAGCAATGACAAAGAGGTAAGGTTTTCCTTACTGTTGTTTTACTTTGCACAGTAGGCAGAATCAATGATGACTGTCATCTAAAACTATACAGTATGTGTCAAATCACAAGGGTAGATATTGTTTTTGAGTGTAGCATGTGttttgtctgtatttgtgtgtgtgtttgctataGAGCAGTGCAGATGATATACACTGTGTTCACACTGAAGAAATTACTTGCACAAATCAATATAATGGTATCAAGATACATTCTGGTGGAAATGAGTATGTCTGCTATGTTAGAAGTGTCAGTTCTGTTGTCCAAAGGAATACTAGGCATCGCATCAGGCAATGTGGTGTGTTAGCAAAGTAGTCAATCCACACAGGGTTATTTTATACATGTCACAAATACGGTTATTAGATGTGTGGCACCATTCAAACCTGTTGGTATCTCTTTATGAAGCAACGCAAAGTGTAAGGTAGAAAATGTATGCATTGAAGGTGTAGCTCAAAACTTATCTGTTCACCCCAATGTCATTTTAAACCTAAGACTAGCTGTACAGAACATGCAGTGTGTGCATAGTATGTGCATACTGTTTTTTC

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041001-178 Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human PTCHD4 (patched domain containing 4).

Ensembl:

ensembl_id ENSDART00000146055

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036486 lncRNA downstream 502576 35560657 ~ 35563832 (-) True XLOC_018248
TCONS_00035935 lncRNA downstream 529732 35535174 ~ 35536676 (-) True XLOC_018245
TCONS_00035930 lncRNA downstream 595329 35469426 ~ 35471079 (-) True XLOC_018242
TCONS_00035922 lncRNA downstream 1072285 34991671 ~ 34994123 (-) True XLOC_018238
TCONS_00035907 lncRNA downstream 1415775 34647500 ~ 34650633 (-) True XLOC_018231
TCONS_00036487 lncRNA upstream 121006 36228428 ~ 36228747 (-) True XLOC_018254
TCONS_00035950 lncRNA upstream 312077 36419499 ~ 36424577 (-) False XLOC_018257
TCONS_00035955 lncRNA upstream 568145 36675567 ~ 36679222 (-) False XLOC_018259
TCONS_00035956 lncRNA upstream 568998 36676420 ~ 36679204 (-) False XLOC_018259
TCONS_00035957 lncRNA upstream 569501 36676923 ~ 36677772 (-) True XLOC_018259
TCONS_00035942 mRNA downstream 224838 35797998 ~ 35841570 (-) True XLOC_018251
TCONS_00035941 mRNA downstream 315598 35719375 ~ 35750810 (-) True XLOC_018250
TCONS_00035940 mRNA downstream 360029 35576739 ~ 35706379 (-) True XLOC_018249
TCONS_00035939 mRNA downstream 487973 35568552 ~ 35578435 (-) False XLOC_018249
TCONS_00035937 mRNA downstream 508506 35551636 ~ 35557902 (-) False XLOC_018247
TCONS_00035944 mRNA upstream 113425 36220847 ~ 36227500 (-) True XLOC_018253
TCONS_00035945 mRNA upstream 272844 36380266 ~ 36393555 (-) True XLOC_018255
TCONS_00035946 mRNA upstream 286490 36393912 ~ 36408836 (-) False XLOC_018256
TCONS_00035947 mRNA upstream 288241 36395663 ~ 36416922 (-) True XLOC_018256
TCONS_00035948 mRNA upstream 312525 36419947 ~ 36559956 (-) False XLOC_018257
TCONS_00035936 other downstream 521214 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035933 other downstream 555428 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035911 other downstream 1359836 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035885 other downstream 2114718 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 2365175 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035984 other upstream 1823265 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 2411275 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00036007 other upstream 2798109 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00036008 other upstream 2925399 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036068 other upstream 4654890 40762312 ~ 40766351 (-) False XLOC_018321

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_00351260_00374024.mRNA True 2658 mRNA 0.50 3 CI01000029 351260 ~ 374024 (-)
bowfin (Amia calva) AMCG00004193 True 1191 mRNA 0.51 4 CM030121.1 37198923 ~ 37231208 (+)