RNA id: TCONS_00035946


Basic Information

Item Value
RNA id TCONS_00035946
length 4726
RNA type mRNA
GC content 0.39
exon number 13
gene id XLOC_018256
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 36393912 ~ 36416922 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

taaacaaagATGCCGCCTGCAAGGTTTCAGATTGGAGATACTGTAATGGGCCGCTGGCCCGGCAGTAACCTTTATTATGAGGTCAAGGTGATGAGTTTTGATAACAAGACTCGCCTCTACACCGTCATCTACAAAGATGGTACTGAGCTGGAGCTGAAGGAGTCAGACATCACGAGTGTGGTCATTTTTCAAACTGCTGGACGGTCGAGGTCAAGATCTCGATCACCGGGACGCTCGCCAGGACGTTCATCGGCACGTTCCCCGGGACGCCCACGTCGCAGTCGCTCCCGTTCACCAGCTAGGACGCCGCGCAGAGCTTCATCTCGCAGCACAGAAGTGCGCAAGGAAAAACTCAAAGAAGTGCTGGAGGTTCGACTCACTCCTGTGGCGATGAAACACGAGAACAACAGCAGCAACAGCAAATCTGAGAAGAAAGAGGAAAATAATACAGCTAAAGCAGCTCCTGTAGTCACAGAGGAGAAGACAGAGACTGAATCAGAGAACCAGACAGGTGGACGATATAATCTACGGCGCAGGAAGGACCAGGGTGATGGCAAGGCTGTAGAGCTGGAGAAAGCCGTAGAGTCTGAGCCGTTATTGCAAACTAAAGCACCAGCAGCCGTCAAGACCGCCGATCTGGAGTTTGGAGGAAGAGTCGGTGTGCTTTTCCTGATGTTTCTGCTGCCAGTGGCTGTGTTGGTATTGCTCATTCTCTGTGGGCAGAAGGATGCCAGTCTCCAGAGCTTTCCTCTTGAGCTTCCCGCTCTTCAGTCTGTCTGGGATTGCCAGGTCTTTGGCATCGTCCTGCTCTGGCTTCTCTTCCAGGCCTTCCTCTCCTTGCTCCCTGTCGGAAAGCTTGTTGAAGGAATGCCACTTAAGAATGGGAAAACTTTGAAATACAGGATTAATGGTTTCTATGCGTTACTCCTCACGGCTGTGGCAGCAGGTGTCGCTGTGTACCAGGAGGTGGATCTCAGCTACATCCATGCACACTTCTTGCAGTTCTACACCTCTGCCCTGCTCATCGCAACTCTCCTCAGCATCTACCTGTTCATCCGCTCCCGCTGGGCATCTAAAGATGAGCTAGCTCCCGGAGGAAACTCTGGCTACATCATTTATGACTTCTTCATGGGCAGAGAGTTAAATCCCCGTATCAAAAGCTTCGATATTAAGTTCTTCTGTGAAATGCGCCCTGGACTGATGGGTTGGGTGTTGATCAACTTTGCGATGTTGCTTGCTGAAATGAAGCAGCAGAATCTGGAGAATCCGTCTCCAGCGATGCTCCTGGTCAACATCTTCCAGCTCCTGTGGGTCATCGATGGCTTGTGGCATGAGGAGAAGCTGCTGACTATGATGGACATAATGTATGATGGCTTTGGATTTATGTTGACATTTGGAGATTTGGCTTTTGTTCCCTTTACATTCACATGTCAAGCATACTATCTAGTCAACCATCCCAATGAGCTCTCAGTGTTCTGGATCATTACTCTCATTGCTATGAACGGAGTGGGATACTATATTTTCAGGAAAGCCAACTCTCAGAAGTTTGCCTTCAGGAAAAACCCTTCTGACCCGGCAGTGTCTCATCTGAAAACTATTCCTACTGCAACTGGAAAAAGTCTCATTGTGTCTGGTCTCTGGGGTTTCGTCCGTCATCCCAATTACCTGGGGGACATCATCATGGCTTTGGCCTGGTCTCTACCATGCGGGTTCAACAATCTGGTCCCTTATTTTTACCTGATCTATTTGGTCACTCTGCTGGTGCACCGTAACGCACGGGACGAGCGTCAGTGCAGGAAAAAGTACGGCTCTGCATGGGAAGAGTACTGCAAAGCTGTCCCGTACCGCATTTTCCCAAGAGTATACTGAGACTTAGTCTGTTATGGACACTCGGGGCCTAAACACCAGGATGACACCGAACATCAGACAGGGAATGAGTCATTAGCAGCTTAGCCTcctttttaaagtcttttaaaaacaaaaacaattacaattgAGCACCAAAATCAAACCAATTTTTCAGTCACAAAGCGTTTACGGATTGTGGACACTGCCCCAGTTTGCAGAGTTTGATCTCTTAGATGTATATTAttgtacatatgtttttttttttttttaactcttaaaTTTGTGTTGCATAATCCTCAACTTGCCATCTCATCTGatgtacacacatatacacatttaaCGTATTTGCTTGGCTATTTaccattgacttttttttatgaCACATTGTGTAATGCTTTTGTATATTGTGTATGATGGGATTTTTTTATATGTGTATAGTAAGGAAAAGATGTAATGTTCGTTCTCAGGACCAgcaatttgtgaaaaaaaaatacaaaaaaaaaaccaactAAAAATAAGCAAAACTATATTTTCATAAGTTCTGTACATAGTTAATACTTTTTTTGGTTTGATTTGCATTTTAGGCATTCATGCACTATGCTAAACCTTGTTTTTCATCCAAAGTTCACACAATTTGGCTTTGCTACCTCAGTTTTATTTCTGTAGAAAACCATGTAtgaattagttttttctttttgagtTTTGGAATCTGGTTTTCAGGCACTATATGAAGTGTATCTTTCTCAATCATAATTGTGTGCTGtgaacaaaaatgttgaactatgaacTTTAATCTTGTGCAAGGTAGCATGACTTTTCATTGAGGGttttaatgaaaaatgaaaaaaatgacaatgCTTAACTGTGAATGTGTATTGTAAAGCTTTTCTTAACCTATTACATCAGCCTCTCTTCTATGCAAGTATATCACTTGTGGGCATAACAGTTGTCCTAATAAGAGTTAAAAATAAGTGTTTCTAGTTAAGATTAGCTGTTACTTTATAGCAGTGAAAGAAAGCGTTGTACAATGTTATTTATCTGGTGTTCAATTGTGTTATTTGACAAGCAGTTTCTGTGTAAATGCCgtttttaatattcattattgattAAACCACTTTAGACAAACAGTATGCCGCATGTCTTGTCCCAAAACGAAATGTACAGATTGctgaatttattcatttacttatctaGAAATCAATAACATATGTAAAGTTGCATTGAGTTTGACTGTTGTGAATTCCTACTGTAGTTTGTCTTTTTCCatcatttcatttctttttttcccccgtcATTAGTTCCACTCACTAATCAAATCACTTGTAACTGTGTGATAAAAACAGACTTTATTTAACCTTATTgttacaaatacatttaatatttcatttgctTTTTGACTTGATATTTCGTATTTGTTTAATGAATGTAGttttatattacaaaaatattacattaagtaaaatattgtccaaaaagtgacatttttgttttataaaataatgttaCTTGATTTTGTTACAGATTGGAATGGAAATATGACAGTATTAGAGTGAAAACATTAGTCTTTTAGTCTCAGAAAAGAAAGTGTTTGAGTCTGTTTTATACTATTGTTTAGTTCAgcggtgtccaaactcaatcctggagggccgcggTCCTACTgcgtttagctccaatttgcttgccaagaagtttctagtatatcttaGTAAAAGACTGattggctggttcaggtgtgtatggttagggttggaactaaactcttcaGTTCACCAGCCCTTGCTAAGTTTAGCTCTGCAGGTTATATTATCAGCAAACCTCACAGACTGAGCAGGAAATATGCATGCTTTGCAGACAGACTAGACTCCAATAAAATCAATAAACCTGGAAGAATGGCATACTTGGACATTCAAATTTATCGCTCCATTGCTAAATATACATAAAAGTACACAgaatataattaaaacataaaaatgtttcGAGTTTTCTCCCTAAAGGTTAGGATTGCAGATAGAAGAGAATGTACGTGCTGGTGTTAATGCCAGAAAAgctttcacaaacacacacacacacacacacacacacacacatatatatatatatatatatatatatatgaattgatTCATTTGAGTCATATGTTCGTAAATCAGACttcatattttaattatacatgtgtatatgtgtgcttCACGCGAGAAGCTTTACCTAAAAACTCGGTGAAATGGGTAATTAACAGAACCTAATTTTAAATTGAGATCTTAGTATAATTATGCACTTATTTGCAATTTGCGACCCCCAGTTTGACACGGATACAGGCGAATATTTCTGCTGTTTCCAACTGAAATCAGAAGTTGGATGGCAAATATAAGTTTAGTTAAGTCACGTGACGTGATTCATGATTAGCTAGTCAGTTGCAGGTGCAGCACCATTTTCTGACATCCATGACAGTCATCTGTTGTCAAGTGAAGTGACACGAGCTAAACGTCTTATAGCTTTTGTGAGAGCCAAAGAAGAAAGTTATGGCTAAAGGGTGAGTAAAGTTCCAGATTTGTCACACTCATTCTTACTAATTATTTACACTTGACAACCTGTTTACTTTTTTGATGTATTGGAGTGGTAATTTAGTAGTCTATCTTTTAATTATGGTAGGGTAATTTACGTTGTGTATCTATCTTCAACACTTTTCGGATGTTATTCACAATTAAATGTAGTCCTGACAGAAACACTGAACAAAACAAGTAGTGTATACTTTCACTGTAACATTACTGTTTCTACAATGTTTCATAAATTAAATTGCAGTATAAAGTAGTGCCGTCAAACGAATAATCGCGATTAATTACATctgaaataaaaattcatttttactaaatatgtgtgt

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0016126 sterol biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005637 nuclear inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
ko00100 Steroid biosynthesis
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030804-11 Predicted to enable oxidoreductase activity, acting on the CH-CH group of donors. Acts upstream of or within cell migration involved in gastrulation. Located in nuclear inner membrane. Is expressed in several structures, including hypochord; nervous system; neural plate; optic vesicle; and tail bud. Human ortholog(s) of this gene implicated in Greenberg dysplasia; Pelger-Huet anomaly; and primary biliary cholangitis. Orthologous to human LBR (lamin B receptor).

Ensembl:

ensembl_id ENSDART00000076419

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036487 lncRNA downstream 165165 36228428 ~ 36228747 (-) True XLOC_018254
TCONS_00036486 lncRNA downstream 830080 35560657 ~ 35563832 (-) True XLOC_018248
TCONS_00035935 lncRNA downstream 857236 35535174 ~ 35536676 (-) True XLOC_018245
TCONS_00035930 lncRNA downstream 922833 35469426 ~ 35471079 (-) True XLOC_018242
TCONS_00035922 lncRNA downstream 1399789 34991671 ~ 34994123 (-) True XLOC_018238
TCONS_00035950 lncRNA upstream 10663 36419499 ~ 36424577 (-) False XLOC_018257
TCONS_00035955 lncRNA upstream 266731 36675567 ~ 36679222 (-) False XLOC_018259
TCONS_00035956 lncRNA upstream 267584 36676420 ~ 36679204 (-) False XLOC_018259
TCONS_00035957 lncRNA upstream 268087 36676923 ~ 36677772 (-) True XLOC_018259
TCONS_00035966 lncRNA upstream 967078 37375914 ~ 37429416 (-) True XLOC_018265
TCONS_00035945 mRNA downstream 357 36380266 ~ 36393555 (-) True XLOC_018255
TCONS_00035944 mRNA downstream 166412 36220847 ~ 36227500 (-) True XLOC_018253
TCONS_00035943 mRNA downstream 286490 36066408 ~ 36107422 (-) True XLOC_018252
TCONS_00035942 mRNA downstream 552342 35797998 ~ 35841570 (-) True XLOC_018251
TCONS_00035941 mRNA downstream 643102 35719375 ~ 35750810 (-) True XLOC_018250
TCONS_00035948 mRNA upstream 11111 36419947 ~ 36559956 (-) False XLOC_018257
TCONS_00035949 mRNA upstream 11111 36419947 ~ 36617313 (-) False XLOC_018257
TCONS_00035951 mRNA upstream 82157 36490993 ~ 36617313 (-) False XLOC_018257
TCONS_00035952 mRNA upstream 108050 36516886 ~ 36575475 (-) True XLOC_018257
TCONS_00035953 mRNA upstream 237925 36646761 ~ 36671660 (-) True XLOC_018258
TCONS_00035936 other downstream 848718 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035933 other downstream 882932 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035911 other downstream 1687340 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035885 other downstream 2442222 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 2692679 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035984 other upstream 1521851 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 2109861 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00036007 other upstream 2496695 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00036008 other upstream 2623985 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036068 other upstream 4353476 40762312 ~ 40766351 (-) False XLOC_018321

Expression Profile

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