RNA id: TCONS_00035947


Basic Information

Item Value
RNA id TCONS_00035947
length 3082
RNA type mRNA
GC content 0.43
exon number 14
gene id XLOC_018256
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 36393912 ~ 36416922 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGAACGAGTTCAGAGCGGGGGCCAGCGTTTTAAAAcaatattctttattttatgaacTTCCACGGATAAGCTTTAGTGATTTTTAGGAAAATAAGGTCGACTGAAGtaaacaaagATGCCGCCTGCAAGGTTTCAGATTGGAGATACTGTAATGGGCCGCTGGCCCGGCAGTAACCTTTATTATGAGGTCAAGGTGATGAGTTTTGATAACAAGACTCGCCTCTACACCGTCATCTACAAAGATGGTACTGAGCTGGAGCTGAAGGAGTCAGACATCACGAGTGTGGTCATTTTTCAAACTGCTGGACGGTCGAGGTCAAGATCTCGATCACCGGGACGCTCGCCAGGACGTTCATCGGCACGTTCCCCGGGACGCCCACGTCGCAGTCGCTCCCGTTCACCAGCTAGGACGCCGCGCAGAGCTTCATCTCGCAGCACAGAAGTGCGCAAGGAAAAACTCAAAGAAGTGCTGGAGGTTCGACTCACTCCTGTGGCGATGAAACACGAGAACAACAGCAGCAACAGCAAATCTGAGAAGAAAGAGGAAAATAATACAGCTAAAGCAGCTCCTGTAGTCACAGAGGAGAAGACAGAGACTGAATCAGAGAACCAGACAGGTGGACGATATAATCTACGGCGCAGGAAGGACCAGGGTGATGGCAAGGCTGTAGAGCTGGAGAAAGCCGTAGAGTCTGAGCCGTTATTGCAAACTAAAGCACCAGCAGCCGTCAAGACCGCCGATCTGGAGTTTGGAGGAAGAGTCGGTGTGCTTTTCCTGATGTTTCTGCTGCCAGTGGCTGTGTTGGTATTGCTCATTCTCTGTGGGCAGAAGGATGCCAGTCTCCAGAGCTTTCCTCTTGAGCTTCCCGCTCTTCAGTCTGTCTGGGATTGCCAGGTCTTTGGCATCGTCCTGCTCTGGCTTCTCTTCCAGGCCTTCCTCTCCTTGCTCCCTGTCGGAAAGCTTGTTGAAGGAATGCCACTTAAGAATGGGAAAACTTTGAAATACAGGATTAATGGTTTCTATGCGTTACTCCTCACGGCTGTGGCAGCAGGTGTCGCTGTGTACCAGGAGGTGGATCTCAGCTACATCCATGCACACTTCTTGCAGTTCTACACCTCTGCCCTGCTCATCGCAACTCTCCTCAGCATCTACCTGTTCATCCGCTCCCGCTGGGCATCTAAAGATGAGCTAGCTCCCGGAGGAAACTCTGGCTACATCATTTATGACTTCTTCATGGGCAGAGAGTTAAATCCCCGTATCAAAAGCTTCGATATTAAGTTCTTCTGTGAAATGCGCCCTGGACTGATGGGTTGGGTGTTGATCAACTTTGCGATGTTGCTTGCTGAAATGAAGCAGCAGAATCTGGAGAATCCGTCTCCAGCGATGCTCCTGGTCAACATCTTCCAGCTCCTGTGGGTCATCGATGGCTTGTGGCATGAGGAGAAGCTGCTGACTATGATGGACATAATGTATGATGGCTTTGGATTTATGTTGACATTTGGAGATTTGGCTTTTGTTCCCTTTACATTCACATGTCAAGCATACTATCTAGTCAACCATCCCAATGAGCTCTCAGTGTTCTGGATCATTACTCTCATTGCTATGAACGGAGTGGGATACTATATTTTCAGGAAAGCCAACTCTCAGAAGTTTGCCTTCAGGAAAAACCCTTCTGACCCGGCAGTGTCTCATCTGAAAACTATTCCTACTGCAACTGGAAAAAGTCTCATTGTGTCTGGTCTCTGGGGTTTCGTCCGTCATCCCAATTACCTGGGGGACATCATCATGGCTTTGGCCTGGTCTCTACCATGCGGGTTCAACAATCTGGTCCCTTATTTTTACCTGATCTATTTGGTCACTCTGCTGGTGCACCGTAACGCACGGGACGAGCGTCAGTGCAGGAAAAAGTACGGCTCTGCATGGGAAGAGTACTGCAAAGCTGTCCCGTACCGCATTTTCCCAAGAGTATACTGAGACTTAGTCTGTTATGGACACTCGGGGCCTAAACACCAGGATGACACCGAACATCAGACAGGGAATGAGTCATTAGCAGCTTAGCCTcctttttaaagtcttttaaaaacaaaaacaattacaattgAGCACCAAAATCAAACCAATTTTTCAGTCACAAAGCGTTTACGGATTGTGGACACTGCCCCAGTTTGCAGAGTTTGATCTCTTAGATGTATATTAttgtacatatgtttttttttttttttaactcttaaaTTTGTGTTGCATAATCCTCAACTTGCCATCTCATCTGatgtacacacatatacacatttaaCGTATTTGCTTGGCTATTTaccattgacttttttttatgaCACATTGTGTAATGCTTTTGTATATTGTGTATGATGGGATTTTTTTATATGTGTATAGTAAGGAAAAGATGTAATGTTCGTTCTCAGGACCAgcaatttgtgaaaaaaaaatacaaaaaaaaaaccaactAAAAATAAGCAAAACTATATTTTCATAAGTTCTGTACATAGTTAATACTTTTTTTGGTTTGATTTGCATTTTAGGCATTCATGCACTATGCTAAACCTTGTTTTTCATCCAAAGTTCACACAATTTGGCTTTGCTACCTCAGTTTTATTTCTGTAGAAAACCATGTAtgaattagttttttctttttgagtTTTGGAATCTGGTTTTCAGGCACTATATGAAGTGTATCTTTCTCAATCATAATTGTGTGCTGtgaacaaaaatgttgaactatgaacTTTAATCTTGTGCAAGGTAGCATGACTTTTCATTGAGGGttttaatgaaaaatgaaaaaaatgacaatgCTTAACTGTGAATGTGTATTGTAAAGCTTTTCTTAACCTATTACATCAGCCTCTCTTCTATGCAAGTATATCACTTGTGGGCATAACAGTTGTCCTAATAAGAGTTAAAAATAAGTGTTTCTAGTTAAGATTAGCTGTTACTTTATAGCAGTGAAAGAAAGCGTTGTACAATGTTATTTATCTGGTGTTCAATTGTGTTATTTGACAAGCAGTTTCTGTGTAAATGCCgtttttaatattcattattgattAAACCACTTTAGACAAACA

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0016126 sterol biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005637 nuclear inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
ko00100 Steroid biosynthesis
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030804-11 Predicted to enable oxidoreductase activity, acting on the CH-CH group of donors. Acts upstream of or within cell migration involved in gastrulation. Located in nuclear inner membrane. Is expressed in several structures, including hypochord; nervous system; neural plate; optic vesicle; and tail bud. Human ortholog(s) of this gene implicated in Greenberg dysplasia; Pelger-Huet anomaly; and primary biliary cholangitis. Orthologous to human LBR (lamin B receptor).

Ensembl:

ensembl_id ENSDART00000019145

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036487 lncRNA downstream 166916 36228428 ~ 36228747 (-) True XLOC_018254
TCONS_00036486 lncRNA downstream 831831 35560657 ~ 35563832 (-) True XLOC_018248
TCONS_00035935 lncRNA downstream 858987 35535174 ~ 35536676 (-) True XLOC_018245
TCONS_00035930 lncRNA downstream 924584 35469426 ~ 35471079 (-) True XLOC_018242
TCONS_00035922 lncRNA downstream 1401540 34991671 ~ 34994123 (-) True XLOC_018238
TCONS_00035950 lncRNA upstream 2577 36419499 ~ 36424577 (-) False XLOC_018257
TCONS_00035955 lncRNA upstream 258645 36675567 ~ 36679222 (-) False XLOC_018259
TCONS_00035956 lncRNA upstream 259498 36676420 ~ 36679204 (-) False XLOC_018259
TCONS_00035957 lncRNA upstream 260001 36676923 ~ 36677772 (-) True XLOC_018259
TCONS_00035966 lncRNA upstream 958992 37375914 ~ 37429416 (-) True XLOC_018265
TCONS_00035945 mRNA downstream 2108 36380266 ~ 36393555 (-) True XLOC_018255
TCONS_00035944 mRNA downstream 168163 36220847 ~ 36227500 (-) True XLOC_018253
TCONS_00035943 mRNA downstream 288241 36066408 ~ 36107422 (-) True XLOC_018252
TCONS_00035942 mRNA downstream 554093 35797998 ~ 35841570 (-) True XLOC_018251
TCONS_00035941 mRNA downstream 644853 35719375 ~ 35750810 (-) True XLOC_018250
TCONS_00035948 mRNA upstream 3025 36419947 ~ 36559956 (-) False XLOC_018257
TCONS_00035949 mRNA upstream 3025 36419947 ~ 36617313 (-) False XLOC_018257
TCONS_00035951 mRNA upstream 74071 36490993 ~ 36617313 (-) False XLOC_018257
TCONS_00035952 mRNA upstream 99964 36516886 ~ 36575475 (-) True XLOC_018257
TCONS_00035953 mRNA upstream 229839 36646761 ~ 36671660 (-) True XLOC_018258
TCONS_00035936 other downstream 850469 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035933 other downstream 884683 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035911 other downstream 1689091 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035885 other downstream 2443973 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 2694430 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035984 other upstream 1513765 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 2101775 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00036007 other upstream 2488609 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00036008 other upstream 2615899 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036068 other upstream 4345390 40762312 ~ 40766351 (-) False XLOC_018321

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_00532933_00536043.mRNA True 1753 mRNA 0.45 5 CI01000029 532645 ~ 536758 (-)