RNA id: TCONS_00035950


Basic Information

Item Value
RNA id TCONS_00035950
length 3061
lncRNA type sense_over
GC content 0.37
exon number 3
gene id XLOC_018257
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 36419499 ~ 36617313 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTACTAATGGCAGCTGCAATTGAAGTGTGGATGTTGTAACATACACCTACTCATCTGGTCCAAgccatttattattgtattactgCCAAAGCCAAGTGCAGTTGATATAATAGCTTATATTTAACTTATAGCTTCGGGTTATGTCTATATTTTGACTTGGCACTGACATCCTAGAAGAGATGAGGAAGGAACTATCGAAACTAAAAGAAGAACTTATTGATGCAATCAGGGAGGAGCTGGGCAAGTCGAACTCTGCATAGAAGAGGCCGAAGTGcacctgtatttttttaaaaaccacaaTCTGTCACTTCAGAGGTCAGCTTCAGTTTAAGACACTATCTCAAAAGCAATGAAAATGGGAAAATTACAGTTTTAACTAGTGGTGATCACAATAACAATGAAAATTGGGAAACATCTGTTGGATATAATGCCTTGGAAAGACATAAGTATTGAGCGCGGGGTGATGGAGGGCGTAAGAGCAAGAGGATAAGACGACGTCTCTACGCGACGCCGTACACCAAATGCCCCAATCGAAGGCAGTCGGAAACGAAGTTGACTGTCAGTATGCAATGGATGACTTTTACTGTGGAAAGAAAATGACGGGGGGAAAAAAGACAAACTATTACTGAATCACATACTGTATTAACCATTGAAGAGTGAAATTGTAAATCAAGCAGATGACATTCATTCTACGGCACATTGTTTAGCAAAGGGCAGGCTTTGTTTATGAATTTACGAAGGCGTTTGGAGACTCGAGTTGGCCTTGTATAGAGCAAAACCTTGAAATCGGGCCAACCAGCCGAGTACGGTCTATTGCTGCAGGACTCTAAAGCTTGTCTTCCTACTATTTTAACCagaatatgtacatttaaaatgacGATGAAATAAACATTATATCTGCAAGTCATTCAATCAATCTGTTCCAATGTACGCCATGATCACATCAGGTAGCTTAACTCGCTCTTTCAGTCGGTTTCCATTATTCTTCAAGAAGCGAATGCCACTGTTATCTGTAAACCTTCTTCGTCTTGTGTGTTCGCTAAGAAGATCACGAAGGACAATGCCTTTCTACTGTACATCGTTGTAGCTCTTTACCAAAATCCTCTCAGCCAATCGAAGTTAAGGTCGACGTCAACGTCATCTCAAGACCATATCTGTAGATAGTGCTAACCAGAAACTTTTTATTCACGtaggctctttttttttttttgtatttctttcgATTTCGGTGCATGTCGTCTTATGAACGGGAAGGGGGACAAAATGGTTGCCAcgaaaaataatttagttattcaGTTCATAAGCAATAAGTGTAGCATTGTTCCACGTCTCTTTTTTTCCGTTTGTTTCCATAATCATCCACTTTGCCCTCAAAACGTGGATGAATGATGTTCTCCAAGTGCAGTTCACAACGGACACCTCTTTATAGCCATAATAAATTTGCAGGGTTTTACTCATTTTACGTTTTATTTTGGGATTTACGCAAGTGGAAGATCTCGCGTATTCATCTCGCATGGGGTATAAACCACCTAAAATTTAACGAGGGCCAAGAAACTGGCTCTGTTTTTCAGAGGAGCTTTATCTTCCAACACGCTTATTTTTTGTTATGGAAACTTTTATTGGGAAATCTGCTTTTTAAGACCGAAATCTTTGTACAAACGTGAAGTGTGATAATAGGCTGTGCGAATTTTGAGGAGAATTCTTGAGAACATGAATTTGTGACGTTCTCTCAGATcagatttctttctttttctcggTTATCCGTTTCCCCCATGCTATGCTCACTTGTCGATCCTTTTGTCGTTACTTTTATGTAGTTCGAAACCATCAATCTCTCAAGGAATCGGAGCGTTTGTATAGAGTGTTTACAGCATTGATTGCACTTTAAAAACCCAGAAGTTCAAATGATATTATTGCTGACACGACCGGCCGTCACTTTGTGATCGGCTGCATCACCAAAGCTAAACGGTAAACTCTAGAACGTCACACACTCCTGATCCACCTTTGTTTTGACGACAAATAACGTTTGACGATCGGTCTATAGGTTAAACAGGTAAAATATTTTGATCAGGGTTGATTCATTCCTGGATAAACCTGTTTGTGATCTTCATGGTTTGTGCCTTGTTCGGAAGTTGCATTTGATATGTCGAAAATATAAAAGCGTATATATAGAGAGTATTAATTTAGGGCCTGCCATAACTTTATTCGTTTCTTTTGCATTTTGCTTCAGTGAGTTGCAAAGGACGCTTTTACGATTTTTGGTTCAAATCAAACATGCATTCACATTCTtctgtgtcatttttttttcttgcattctGTTGCATTACAGTGTGGTTTGTGTTATGGTTAAGACCATGTATGCTGGTGGGATCTGAGAAACTGATCTTTGATGGCGGGAGTCAGTTGAACGCTGTTGACGGCACAATAAGTCTTGATTATGAACAGACAGTGCTGGTCAGATTCAACTGAAGGTCctttttaatgcaattttcaGTTTCCTTATCTTTCTATTTTATCGTTCATGTTGTACCATACTGTTTTCATGTTAATTAGAAGTTTCTTACACGCTAACATTGTTTTGTTtgagcaaattaaataaaaattgcaatacATTGGTGTTTACGTTTTTTTCTGAATTGAAACATTGACATGACttgtttggattttttatttgatatatttaggTGTTTTTGCTTGTATTTCTATAAAAATAGGTAAGACCTTAAGAAACTTTTCTCCATAGATAaaccatagtaaaaaaaatactacaacaaAAATTGTGGTGACTAAAATAAGTgcgcttaaagggatagttcacccaaaaatgtattaTGCCATCATTTACGAACCTTTGTTTCAAACATGTGACTCTCTTTGTTCTGTTAAagactaaagaagatatttagataAAAGCTttaaacctgtaacaattgattTCTGTACCATGTAAAACCTGTGAAAAtcactaaataaaataagttagtttaacttaaaatgatttaaaaatgtactttgacTTAATGAAAGGGAGTTGGAGGTAACTTAAAAACTGATATTAAG

Function

GO:

id name namespace
GO:0000822 inositol hexakisphosphate binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036487 lncRNA downstream 190752 36228428 ~ 36228747 (-) True XLOC_018254
TCONS_00036486 lncRNA downstream 855667 35560657 ~ 35563832 (-) True XLOC_018248
TCONS_00035935 lncRNA downstream 882823 35535174 ~ 35536676 (-) True XLOC_018245
TCONS_00035930 lncRNA downstream 948420 35469426 ~ 35471079 (-) True XLOC_018242
TCONS_00035922 lncRNA downstream 1425376 34991671 ~ 34994123 (-) True XLOC_018238
TCONS_00035955 lncRNA upstream 250990 36675567 ~ 36679222 (-) False XLOC_018259
TCONS_00035956 lncRNA upstream 251843 36676420 ~ 36679204 (-) False XLOC_018259
TCONS_00035957 lncRNA upstream 252346 36676923 ~ 36677772 (-) True XLOC_018259
TCONS_00035966 lncRNA upstream 951337 37375914 ~ 37429416 (-) True XLOC_018265
TCONS_00035972 lncRNA upstream 1185474 37610051 ~ 37611589 (-) True XLOC_018268
TCONS_00035947 mRNA downstream 2577 36395663 ~ 36416922 (-) True XLOC_018256
TCONS_00035946 mRNA downstream 10663 36393912 ~ 36408836 (-) False XLOC_018256
TCONS_00035945 mRNA downstream 25944 36380266 ~ 36393555 (-) True XLOC_018255
TCONS_00035944 mRNA downstream 191999 36220847 ~ 36227500 (-) True XLOC_018253
TCONS_00035943 mRNA downstream 312077 36066408 ~ 36107422 (-) True XLOC_018252
TCONS_00035951 mRNA upstream 66416 36490993 ~ 36617313 (-) False XLOC_018257
TCONS_00035952 mRNA upstream 92309 36516886 ~ 36575475 (-) True XLOC_018257
TCONS_00035953 mRNA upstream 222184 36646761 ~ 36671660 (-) True XLOC_018258
TCONS_00035954 mRNA upstream 250506 36675083 ~ 36679233 (-) False XLOC_018259
TCONS_00035958 mRNA upstream 373035 36797612 ~ 36800002 (-) True XLOC_018260
TCONS_00035936 other downstream 874305 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035933 other downstream 908519 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035911 other downstream 1712927 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035885 other downstream 2467809 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 2718266 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035984 other upstream 1506110 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 2094120 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00036007 other upstream 2480954 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00036008 other upstream 2608244 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036068 other upstream 4337735 40762312 ~ 40766351 (-) False XLOC_018321

Expression Profile

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