RNA id: TCONS_00035949


Basic Information

Item Value
RNA id TCONS_00035949
length 4259
RNA type mRNA
GC content 0.46
exon number 13
gene id XLOC_018257
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 36419499 ~ 36617313 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGGGGATCCCAGCGGCACGTTGCCGCTATTAGAAGATCAGGCGCTTGCAAGACCAAACAGAAAATTGCATTCtcacttacattttttttcttccgtgCTGCAGCATCCACACACAGGGGTGCAATGCGGTAGATCATGTAGACCgagttcttttttatttactttcatttttatttttttactttgcgGGATACAAACTCCTCTGGTCCTGCGGCGTTTCATTCATCTCTTCTTGTGATCAAGTGCGAACTTTGAAAACTCTCTGAAATTATATAACGCCGAATATATAGCGCGGAATTCATCATGAGtgAGCAGAGTATCTGTCAGGCGAGGGCCGCTGTCATGGTTTATGATGACGCCAATAAGAAGTGGGTTCCGGCTGGTGGATCCACAGGCTTTAGCAGAGTCCACATCTATCACCACACTGGCAACAACGCCTTCCGAGTAGTGGGCCGTAAAATTCAGGACCACCAGGTGGTAATAAACTGTGCCATTCCCAAGGGGCTGAAATACAACCAGGCCACGCAAACCTTTCACCAGTGGCGAGATGCACGGCAGGTGTACGGCCTTAACTTTGGCAGCAAAGAGGATGCCAATGTATTTGCCAGTGCCATGATGCATGCCCTAGAGGTGCTGAACTCTCAGGATGCAGGTCCCCCGTTGCCAAGACAGACCCCTCAGGTGCAGAATGGCCCTTCACCAGAAGAGCTGGAGGTGCAGAGAAGGCAGCTGCAGGAGCTCCAGCGTCAGAAGGAGAAAGAGCAGGAGCGACTGGATCGAGAACGACAGGAACGAGAACGTCAGGAGCGAGAGATGCTGGAACGGGAGCGCACCGAGAGGGAACGGCAGGATCGGGAAAGGCAGGATCGGGAACGGCAGGAACGGGAGCGTCTGGAGAGGGAACGCACCGAGCAGGAGCGTCTGGATCGTGAACGTCAGGAGCAGGAGCTGCTGGAGAGGGAACGGCAGGAACGGGAgctgatggagagagagagagccgagAGAGAAAAGCAGGAGCGAGAGCAGCAAGAGCAGCTGGACAGAGAGCAGATGGACTGGGAGAGAGGGAGACGCATCTCCAACGCCGATTCAGCACACGGGGTGCCGACCCCTCCGCCCCCACCACCTCTCCCTCCCAGCTCCACTGTGACTCCCACCACCGCTGGACCTCCACCTCCCCCTGGCCCCCCTCCTCCCCCGCCACCTCTGCCTCCCACGCTTACCCCAACAGGTCCCCCACCTCCCCCTGGGCCACCTCCTCCACCCTCAGGCCAGGCTCCCCCACCAGCACCCCCTCCACCCCCTGCCCCACCACTGCCTTCGGGTCTGTTCACCCCCTCGCCCACTACAGACGAGAACAAGGGGCTGTCTGGGCTCGCAGCGGCCCTTGCTGGAGCCAAGCTAAAGAAAGTGCCAAGGAGTGACGAACCCCTGGCTCCAGCTGCAGGATCCGCAGTAAGTTCTGGTGGTGCCAAACCTGAAGCATCCCGTGGGAATGGTCCTTTACCTGGAGGAGGAGGCCTAATGGAGGAGATGAGCGCCCTGCTGGCCAGGAGgAGAAGAATTGCTGAGAAAGGATCATCGCCAGAACCTGAGCAGAAAGCTGATGACTTCGAGGCTACTGTAACTCCAAAAGTGTCAGCTTGTAGCACACCAGATATGCCCAGAAAGCCTTGGGAGCGGACGAACACCATGAATGGTAGCAAATCACCAGTCATCGGAAGACCAAGGTCTACACCAACTCCAACCGGATCCATAAGTGCCAACGGGGTGCCAACAGAAGCTCTTGACTACGACAGATTGAAACAGGACATCCTAGAAGAGATGAGGAAGGAACTATCGAAACTAAAAGAAGAACTTATTGATGCAATCAGGGAGGAGCTGGGCAAGTCGAACTCTGCATAGAAGAGGCCGAAGTGcacctgtatttttttaaaaaccacaaTCTGTCACTTCAGAGGTCAGCTTCAGTTTAAGACACTATCTCAAAAGCAATGAAAATGGGAAAATTACAGTTTTAACTAGTGGTGATCACAATAACAATGAAAATTGGGAAACATCTGTTGGATATAATGCCTTGGAAAGACATAAGTATTGAGCGCGGGGTGATGGAGGGCGTAAGAGCAAGAGGATAAGACGACGTCTCTACGCGACGCCGTACACCAAATGCCCCAATCGAAGGCAGTCGGAAACGAAGTTGACTGTCAGTATGCAATGGATGACTTTTACTGTGGAAAGAAAATGACGGGGGGAAAAAAGACAAACTATTACTGAATCACATACTGTATTAACCATTGAAGAGTGAAATTGTAAATCAAGCAGATGACATTCATTCTACGGCACATTGTTTAGCAAAGGGCAGGCTTTGTTTATGAATTTACGAAGGCGTTTGGAGACTCGAGTTGGCCTTGTATAGAGCAAAACCTTGAAATCGGGCCAACCAGCCGAGTACGGTCTATTGCTGCAGGACTCTAAAGCTTGTCTTCCTACTATTTTAACCagaatatgtacatttaaaatgacGATGAAATAAACATTATATCTGCAAGTCATTCAATCAATCTGTTCCAATGTACGCCATGATCACATCAGGTAGCTTAACTCGCTCTTTCAGTCGGTTTCCATTATTCTTCAAGAAGCGAATGCCACTGTTATCTGTAAACCTTCTTCGTCTTGTGTGTTCGCTAAGAAGATCACGAAGGACAATGCCTTTCTACTGTACATCGTTGTAGCTCTTTACCAAAATCCTCTCAGCCAATCGAAGTTAAGGTCGACGTCAACGTCATCTCAAGACCATATCTGTAGATAGTGCTAACCAGAAACTTTTTATTCACGtaggctctttttttttttttgtatttctttcgATTTCGGTGCATGTCGTCTTATGAACGGGAAGGGGGACAAAATGGTTGCCAcgaaaaataatttagttattcaGTTCATAAGCAATAAGTGTAGCATTGTTCCACGTCTCTTTTTTTCCGTTTGTTTCCATAATCATCCACTTTGCCCTCAAAACGTGGATGAATGATGTTCTCCAAGTGCAGTTCACAACGGACACCTCTTTATAGCCATAATAAATTTGCAGGGTTTTACTCATTTTACGTTTTATTTTGGGATTTACGCAAGTGGAAGATCTCGCGTATTCATCTCGCATGGGGTATAAACCACCTAAAATTTAACGAGGGCCAAGAAACTGGCTCTGTTTTTCAGAGGAGCTTTATCTTCCAACACGCTTATTTTTTGTTATGGAAACTTTTATTGGGAAATCTGCTTTTTAAGACCGAAATCTTTGTACAAACGTGAAGTGTGATAATAGGCTGTGCGAATTTTGAGGAGAATTCTTGAGAACATGAATTTGTGACGTTCTCTCAGATcagatttctttctttttctcggTTATCCGTTTCCCCCATGCTATGCTCACTTGTCGATCCTTTTGTCGTTACTTTTATGTAGTTCGAAACCATCAATCTCTCAAGGAATCGGAGCGTTTGTATAGAGTGTTTACAGCATTGATTGCACTTTAAAAACCCAGAAGTTCAAATGATATTATTGCTGACACGACCGGCCGTCACTTTGTGATCGGCTGCATCACCAAAGCTAAACGGTAAACTCTAGAACGTCACACACTCCTGATCCACCTTTGTTTTGACGACAAATAACGTTTGACGATCGGTCTATAGGTTAAACAGGTAAAATATTTTGATCAGGGTTGATTCATTCCTGGATAAACCTGTTTGTGATCTTCATGGTTTGTGCCTTGTTCGGAAGTTGCATTTGATATGTCGAAAATATAAAAGCGTATATATAGAGAGTATTAATTTAGGGCCTGCCATAACTTTATTCGTTTCTTTTGCATTTTGCTTCAGTGAGTTGCAAAGGACGCTTTTACGATTTTTGGTTCAAATCAAACATGCATTCACATTCTtctgtgtcatttttttttcttgcattctGTTGCATTACAGTGTGGTTTGTGTTATGGTTAAGACCATGTATGCTGGTGGGATCTGAGAAACTGATCTTTGATGGCGGGAGTCAGTTGAACGCTGTTGACGGCACAATAAGTCTTGATTATGAACAGACAGTGCTGGTCAGATTCAACTGAAGGTCctttttaatgcaattttcaGTTTCCTTATCTTTCTATTTTATCGTTCATGTTGTACCATACTGTTTTCATGTTAATTAGAAGTTTCTTACACGCTAACATTGTTTTGTTtgagcaaattaaataaaaattgcaatacA

Function

GO:

id name namespace
GO:0000822 inositol hexakisphosphate binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-010323-11 Predicted to enable SH3 domain binding activity and profilin binding activity. Predicted to be involved in actin polymerization or depolymerization; actin polymerization-dependent cell motility; and axon guidance. Predicted to act upstream of or within intracellular transport. Predicted to be located in cell projection; cytoplasm; and cytoskeleton. Is expressed in paraxial mesoderm and somite. Orthologous to human ENAH (ENAH actin regulator).

Ensembl:

ensembl_id ENSDART00000172395

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036487 lncRNA downstream 191200 36228428 ~ 36228747 (-) True XLOC_018254
TCONS_00036486 lncRNA downstream 856115 35560657 ~ 35563832 (-) True XLOC_018248
TCONS_00035935 lncRNA downstream 883271 35535174 ~ 35536676 (-) True XLOC_018245
TCONS_00035930 lncRNA downstream 948868 35469426 ~ 35471079 (-) True XLOC_018242
TCONS_00035922 lncRNA downstream 1425824 34991671 ~ 34994123 (-) True XLOC_018238
TCONS_00035955 lncRNA upstream 58254 36675567 ~ 36679222 (-) False XLOC_018259
TCONS_00035956 lncRNA upstream 59107 36676420 ~ 36679204 (-) False XLOC_018259
TCONS_00035957 lncRNA upstream 59610 36676923 ~ 36677772 (-) True XLOC_018259
TCONS_00035966 lncRNA upstream 758601 37375914 ~ 37429416 (-) True XLOC_018265
TCONS_00035972 lncRNA upstream 992738 37610051 ~ 37611589 (-) True XLOC_018268
TCONS_00035947 mRNA downstream 3025 36395663 ~ 36416922 (-) True XLOC_018256
TCONS_00035946 mRNA downstream 11111 36393912 ~ 36408836 (-) False XLOC_018256
TCONS_00035945 mRNA downstream 26392 36380266 ~ 36393555 (-) True XLOC_018255
TCONS_00035944 mRNA downstream 192447 36220847 ~ 36227500 (-) True XLOC_018253
TCONS_00035943 mRNA downstream 312525 36066408 ~ 36107422 (-) True XLOC_018252
TCONS_00035953 mRNA upstream 29448 36646761 ~ 36671660 (-) True XLOC_018258
TCONS_00035954 mRNA upstream 57770 36675083 ~ 36679233 (-) False XLOC_018259
TCONS_00035958 mRNA upstream 180299 36797612 ~ 36800002 (-) True XLOC_018260
TCONS_00035959 mRNA upstream 184491 36801804 ~ 36809059 (-) True XLOC_018261
TCONS_00035960 mRNA upstream 228474 36845787 ~ 36887176 (-) False XLOC_018262
TCONS_00035936 other downstream 874753 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035933 other downstream 908967 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035911 other downstream 1713375 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035885 other downstream 2468257 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 2718714 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035984 other upstream 1313374 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 1901384 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00036007 other upstream 2288218 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00036008 other upstream 2415508 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036068 other upstream 4144999 40762312 ~ 40766351 (-) False XLOC_018321

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU172286 True 694 lncRNA 0.66 2 CI01000029 550821 ~ 559637 (+)
bowfin (Amia calva) AMCG00004192 True 1377 mRNA 0.62 11 CM030121.1 36884358 ~ 36904094 (+)