RNA id: TCONS_00035956


Basic Information

Item Value
RNA id TCONS_00035956
length 497
lncRNA type retained_intron
GC content 0.43
exon number 3
gene id XLOC_018259
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 36675083 ~ 36679233 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGCAAACGCGATGGCAGAACCAGGAACTGAGAAAGTGATCAAGCTTGTTCCTGAGAATCTTCTCAAGAAACGCAAGGCATACCAGGCTATCAAAGCCAATCAAGCTAAACTTGCTTTACAGCAGAAGAAAAGGGTAAGAATTCTTCTATGTGTTAATAGTCCAATAATTACttcaaaaacaaactaataaactaaatatttcaCCAGGTCCAAAAAGGAATCCCCTTCAAGTTTAAGCGCTTGGAGGAGTTTTTGCAAAACAGCAGGAGAAAGCATCGAGATGAGACCAGGCTCGCCAGACTCAAAAAGAGACCTCCACCACCCATGCCACCAGCCAAGAACAGCCTGGCATTCGCTGTCCGCATTAGAGAGATCAAAGGTGTGAGCCCTAAAGTGATGAACGTTATTCAGATGCTGAGACTCAGGAAGATCTTCAGTGGCACCTTTGTCAAAGTCAGCAAGCATTCAATAAACATGCTTAAGACTGTGGAACCT

Function

GO:

id name namespace
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-970 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in several structures, including alar plate midbrain region; immature eye; nervous system; neural plate; and segmental plate. Orthologous to human RPL7L1 (ribosomal protein L7 like 1).

Ensembl:

ensembl_id ENSDART00000143627

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035950 lncRNA downstream 251843 36419499 ~ 36424577 (-) False XLOC_018257
TCONS_00036487 lncRNA downstream 447673 36228428 ~ 36228747 (-) True XLOC_018254
TCONS_00036486 lncRNA downstream 1112588 35560657 ~ 35563832 (-) True XLOC_018248
TCONS_00035935 lncRNA downstream 1139744 35535174 ~ 35536676 (-) True XLOC_018245
TCONS_00035930 lncRNA downstream 1205341 35469426 ~ 35471079 (-) True XLOC_018242
TCONS_00035966 lncRNA upstream 696710 37375914 ~ 37429416 (-) True XLOC_018265
TCONS_00035972 lncRNA upstream 930847 37610051 ~ 37611589 (-) True XLOC_018268
TCONS_00035983 lncRNA upstream 1251137 37930341 ~ 37933269 (-) False XLOC_018273
TCONS_00036899 lncRNA upstream 1448693 38127897 ~ 38130828 (-) False XLOC_018274
TCONS_00036900 lncRNA upstream 1448693 38127897 ~ 38131043 (-) False XLOC_018274
TCONS_00035953 mRNA downstream 4760 36646761 ~ 36671660 (-) True XLOC_018258
TCONS_00035949 mRNA downstream 59107 36419947 ~ 36617313 (-) False XLOC_018257
TCONS_00035951 mRNA downstream 59107 36490993 ~ 36617313 (-) False XLOC_018257
TCONS_00035952 mRNA downstream 100945 36516886 ~ 36575475 (-) True XLOC_018257
TCONS_00035948 mRNA downstream 116464 36419947 ~ 36559956 (-) False XLOC_018257
TCONS_00035958 mRNA upstream 118408 36797612 ~ 36800002 (-) True XLOC_018260
TCONS_00035959 mRNA upstream 122600 36801804 ~ 36809059 (-) True XLOC_018261
TCONS_00035960 mRNA upstream 166583 36845787 ~ 36887176 (-) False XLOC_018262
TCONS_00035961 mRNA upstream 166848 36846052 ~ 36887265 (-) False XLOC_018262
TCONS_00035962 mRNA upstream 169494 36848698 ~ 36887516 (-) True XLOC_018262
TCONS_00035936 other downstream 1131226 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035933 other downstream 1165440 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035911 other downstream 1969848 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035885 other downstream 2724730 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 2975187 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035984 other upstream 1251483 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 1839493 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00036007 other upstream 2226327 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00036008 other upstream 2353617 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036068 other upstream 4083108 40762312 ~ 40766351 (-) False XLOC_018321

Expression Profile

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