RNA id: TCONS_00035961


Basic Information

Item Value
RNA id TCONS_00035961
length 5219
RNA type mRNA
GC content 0.40
exon number 10
gene id XLOC_018262
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 36845787 ~ 36887516 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGATTTCCATTGGTGGAGGTTATTTTGAGGGGCTCGTGTTGTCAGCTGTTGTCTCAAATGCTTGTTGGACCCTCCTCACTGCTCTTTTACTCTGATAAAACTCTGGACTGGACTGCTTCATTGTCCTACTTTCCTGTTTTCTGATAAAACTTAAAGAGAAACGCGTAGGCAGCAGATGATGGAGGGCAGTGACCAGATCTCTGAAAACGTCAATGAACAAGTCAATGAATCCGAGGAGCAGCAGGTGGACCCGATGGAGGACTTTAGCAGGCAGTTAGAAGATATCATCAACACGTATGGGTCGGCGTCCAGTCTCATGCAGGAGCAGATCTCCATCCTGGAGTCTGAGGAGGGGAAGGATGAGGAGGCGAAGGCCGATGAAGAGTCTGAATCCAAAGAAGTTGCTGCTGGTGCAGACAAAGAGCAGAATACTGAGAAGAAACTTCTCAAGGGACTGGGTAAAGAGGCCGCATCCTTATTGCAGAGTCTGAACAAGCTGGGCTCACCAGAAGAGAAGGTGGAAATGGTGTTGAAGAAATACAGCGAGCTGGTGGACGAACACAGAACTGAGAAGAAACAGCTGGAGCAGTTTCAGCAGAGACAGGGTCTTCTGGTCAAGCAGAGAGATCAGCTTCAGTTCGAACACAGTCGTGCCATTCTGGCCCGCAGTAAGCTGGAGACACTCTGCAGGGAACTTCAGAGACATAACAGGACACTGAAGGAAGAGAGTCTGCAGAGGCTGCGGGAGGATGAAATGAAGCGGAAGGAGATCACCACTCATTTCCAGAGCACACTGGTGGACATTCAGAGTCAGATCGAGCAGCACAGCAACCGCAACAACAAGCTGTGCAAGGAGAACAGCGAATTGGCCGGCAAACTCAAGACCATTATAGAGCAGTACGAGCGGAGAGAGGAGAGTTTAGAGAAGATCTTCAAGCACAGAGACCTACAGCAGAAACTATCTGATGCCAAGCTGGAAGAAGCCAACATGCTGCTCACTCAAGCTGAAGAGAAGCACAAGAGAGAGAAGGAATATTTGCTTAAAGAAGCTATTGacaaaacaaagaaatactgCACACTGAGGGAGCAGGAGTTACAGATGAAGAAACAGCTTGTGTTGTACTCCCAGAAGTTTGATGACTTCCAGAACACTCTGGCCAAAAGCAATGAGATTTATGTCACCTTCAAACAGGAAATGGATAAGATGACAAAGAAGATGAAAAAGCTGGAAAAGGAGTCCACTACATGGAAAACGCGGTTTGAAAGCTGCAACAAAGCGCTTGTGGAAATGATTGACGAGAGATCGGAAAAGGGCAAAGAGTTTGAGCTCTTCACACTGAAAATCGACCGTCTGGAGACACTCTGTCGAGCATTGCAGGATGAAAGGAAAAGTTTGTACGCCAAGATTAAAGAGATACGGTTCCCAGAGAAGATGACGGCAGCACCTGTGGTGGACATACCACCGATAGATGAACTTCCAGAGCTCGTCCAGACTCCCAATCCCATGTTGACTGCAGAGATGGAGAAGCTGCGAGCAGAACAGGTTCGTTTACAGGATTTTGCAGCTTCCCTGCTAAATCCCATACCAGATGTTGCTGGAGAGTCTGATAGCGAGGAtgaggaaaaagaaaaagacagtcCAGCAATTCCTGAGGCTCAGTCAATCAAACAAGCAGATCAACTGGAATCAACACAAGAGCAATCCTCTACCACAAAAGTTATTGAAGAGAAGCCCACAGCCACCAAATCTGAGATGGATTCCAAACTTCCTGAAGCTCCCCAACTTGAGTCCATCAAACCAGTTGATCAACTGAAATCAACACAAGATGAATCCTCTACCATAAAAGTTACAATCACTGAAAAGAAGCCAACAAGTCCTGCAACCACCAAACCTGACACGGAATCCAAAATTCCTCCAGAGCCTTTTCCAAAAGACACCAAACCAGTGGATAAACTGGAATCAACAGAAGAGAAATCTATCACAGAAGATCTGAAACCAGAGGTTGCTGTAAACGCAGTGAAGCCTTTAATACCAACCATTCTTGAAGATGCCAAACCTGAGATGGAATCCAAACTTCCTGAAGAAACTCTGAAACTAGTGGATAAACCAAAATCAACACAAGTTAAATCCTCTACCACTGAGAAACAGAATACAGAGAAGCCATCAGTACCAACAATTCCTGAACTCACCAAACCTGAGGTAGAGTCCAAACTTCCTCAAGAGGCAGGAAAACCAGAGTCTGCCAAAGAGGAACCAAGACAGGAAGAGGTGAAAAAAGCAGAAGACACGTTCAAACAGGAATCCGCTCAGCCAAAGCCTGTCGTGAAAGAAGAGAGCAAAGATGAAGCTGTTAAACCTGAGGTACCTGAACCGGAGCCACCCAAACAAGAGCCACTTAAGGAAGAGGACACTCAGAAAGCCACAGCTGTATCTGAGGGAGCCAAAGCATCAGCGATAAAACCCAAAGCCCCGAAATCCCAAGACGCCAAAGCGAAGGCAAGCAAAGCCCAGCCTAAAAAACAAACTCCTGCTAAGAAGAAAGGTGCTGCCAAAGGCCCAAATAAAAGCTAAGCTGAAATAAACTatacaataagttttttttttttaatgatttcaagATCAGTCTGTTTTTGTAGTTAGACCTGCGTCTTCCTATACACTAGTTATACGTTACATACTGAAGATGATAGACTGGTCATAGACTACTTTCTTATAAGAAAGTTTACTTCAATGATGAAGTCCTGGTTTTCTCAATGTAATatggattttttgttgttgttgttgttgttgttgttgttgtacggACTTCTCTCAGCACCCACAAATAAACATCTACGTTTGACGATTCTAGCAAATTTGCTCATACCAAGACATTAGTTATATGGGTCTTATTTATTGACAatagttaaagggttagttcatccaAATATTCCTTTGAGGTCCAGACCCTCAAACAGTCCATATggcttcagtggttcaatcaaaATATTATCAAACTAAGTACATTTGTACACATATATAACAAACACAACAACCTCATTGAACagtttctcctcagtgtcagtacaGCGGGGAATATAAGCATTGAACGTTAtgtttttttctgggaataatcCTACTAAAGAAGCTGTTTACatagaattgaaccagattttggtaaaaaccaaacaatacaaacataaaaatattttaaaaaactaaaaaaacaaaactgaataataagttatgtgtaataacaatgaaatgacacaagaagaAAGTAGTGAActtctgaaatgtatttaatactttatataaaaggcttttttggttatggcagcttaaagacgcctctcatatggagaatgaagttacATGAATTGCTCAGGGGCGATTTTTTCACAGATTTCAGccgagtgtaaaaatcttgatggttctgtgggtctcatctattaaatctgatctttaatttgtattttctattggacttaagtcaggtgattggctgggccattctacagcttgattttctttctttgaaagcatttgagagtttttttGGCTATGTTTTACAATAGATCATTTTTTTGCTAAAAGGTCCACCCTAGTTTCAACTTCATattcctgataatgtagatgttgaactgaagcagctaatattcatttacaatgaggaagggcaaaGGATTGATAAATAACTATAGAGTGATTTCAATtcctgtctgggctttcactgcctttctacacttcCCTTggaaactaattagatttgttttctttacatatgttgaTTTCTtcagttgttaccaacatccggggaaaatttcaaaccaacagcacctttagaaatatgttttctgtaaaaaaagtgacatgttcaatacttatttccccccgGTATATTGCTCAACTTATATCCCCCGGGGACCCACACACAACTTCCTTGCATCTGGGGTAATACATCACACCAGCACATAACATGTGAACGCATGCCCTAAATTTATATAAAGTAGGTATTTTTgtgtgcacaaaagtattcttgtagcttGTTAATTTTCcggttgaaccactgaaggcatatggtctgttttgaggatgttgtTTGCTATTTTTCTGGACTATTGAACATGTCAGGAATATTGCTGTCTATGTATGATGACTAAACTCTCAGaattcacctaaaatatcttcatttttttttacgaTGATGAATGGCCTCAGCACAACATaaggatgagtaattaataacaatgttaatttttgagtgaactacactTTAATATGTTAACTCATTTGATCTAATTGTGAGTAATATATTTTCACAGCCTTTATTAAACATTGTGCATTTTAATCAATACAAATTAAGTTGCTTATTGTTTGCACATGCTTTCAGTGTTACAAATACATCTTTTAATTATGAAATTGATCAAACTAAGATGAATGGCAACACTTTCAAATATTGACAcccgctttgaatgttatcactcgattgaatgggcgttattagtggttatcagctgatagatatgggccagtaggggccttcagtgtctactggtaggctcagaaggctgttctCATCCATCCATATGGTTAATTAGCTATACTAAAAGAGAAGACTgtagatccagatctgtttttacattgctCTGATGGTTCGGTgtgggttggggtagatgttaataaaatacaattattgggaaatctaataaataatatatatagttCTCGTTAACTTTCCGCCACAGgcagccatatgtgatctataactgattaaccatgtggatggatgataacagctttCTGAGTCTACCAGtgggcgcagaaggcccctacttgGCCCATACtgtatctatcagctgataaccactgataacgcccattcaatccaatgataacattcgaatcggctaGCACAGATCATGAGATACCAGTTAATGCAACAGGAACTAAAACATTCATTAACGATTGGCACATCCATCTACCTAATTAACAGATTAAGAAATATATGAATTGCTGTGAATTAAATGTGTTGATGTACTGCTATTTTATCACTAATACTTCTTTGGCTAATTGTGTAAATTAAGCATTATTTATGACAATGCATTTCGAACATCCAGTTGTCTGCTTGAATTAATGATTAGTTAATACTTAgcaaatatattacttttttataggtcacactttattttaatgtacaattcactctattactaaaatatttactatttagataga

Function

GO:

id name namespace
GO:0019905 syntaxin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-322 Predicted to enable syntaxin binding activity. Is expressed in adaxial cell; cardiovascular system; musculature system; and somite. Orthologous to human TXLNB (taxilin beta).

Ensembl:

ensembl_id ENSDART00000146994

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035955 lncRNA downstream 166830 36675567 ~ 36679222 (-) False XLOC_018259
TCONS_00035956 lncRNA downstream 166848 36676420 ~ 36679204 (-) False XLOC_018259
TCONS_00035957 lncRNA downstream 168280 36676923 ~ 36677772 (-) True XLOC_018259
TCONS_00035950 lncRNA downstream 421475 36419499 ~ 36424577 (-) False XLOC_018257
TCONS_00036487 lncRNA downstream 617305 36228428 ~ 36228747 (-) True XLOC_018254
TCONS_00035966 lncRNA upstream 488649 37375914 ~ 37429416 (-) True XLOC_018265
TCONS_00035972 lncRNA upstream 722786 37610051 ~ 37611589 (-) True XLOC_018268
TCONS_00035983 lncRNA upstream 1043076 37930341 ~ 37933269 (-) False XLOC_018273
TCONS_00036899 lncRNA upstream 1240632 38127897 ~ 38130828 (-) False XLOC_018274
TCONS_00036900 lncRNA upstream 1240632 38127897 ~ 38131043 (-) False XLOC_018274
TCONS_00035959 mRNA downstream 36993 36801804 ~ 36809059 (-) True XLOC_018261
TCONS_00035958 mRNA downstream 46050 36797612 ~ 36800002 (-) True XLOC_018260
TCONS_00035954 mRNA downstream 166819 36675083 ~ 36679233 (-) False XLOC_018259
TCONS_00035953 mRNA downstream 174392 36646761 ~ 36671660 (-) True XLOC_018258
TCONS_00035952 mRNA downstream 270577 36516886 ~ 36575475 (-) True XLOC_018257
TCONS_00035963 mRNA upstream 27878 36915143 ~ 36917670 (-) True XLOC_018263
TCONS_00035964 mRNA upstream 376398 37263663 ~ 37286937 (-) False XLOC_018264
TCONS_00035965 mRNA upstream 378091 37265356 ~ 37287107 (-) True XLOC_018264
TCONS_00035967 mRNA upstream 588571 37475836 ~ 37481180 (-) False XLOC_018266
TCONS_00035968 mRNA upstream 588911 37476176 ~ 37490612 (-) True XLOC_018266
TCONS_00035936 other downstream 1300858 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035933 other downstream 1335072 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035911 other downstream 2139480 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035885 other downstream 2894362 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 3144819 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035984 other upstream 1043422 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 1631432 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00036007 other upstream 2018266 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00036008 other upstream 2145556 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036068 other upstream 3875047 40762312 ~ 40766351 (-) False XLOC_018321

Expression Profile

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