RNA id: TCONS_00035967


Basic Information

Item Value
RNA id TCONS_00035967
length 698
RNA type mRNA
GC content 0.41
exon number 3
gene id XLOC_018266
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 37475836 ~ 37490612 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGAAGTCCATCTGCGAGTGCTGCTTCACAAACTCACCGGCGTGAAAGGCGCTGCTCCTGTGAAAACCTGAAGGACAAGGAATGCGTGTACTTTTGCCACATAGGAATCGTGTGGGTCGATACACCCAGTCAGGTCATTCCCTATGGCATGGGCTCACGCCTGAGACGGGATGTTGAACGATGTCGTTGCGTCGACGGGAAAGATTCAAAGTGTTTGCGGTTTTGCTTCAACTCGACTCTTCAGAAAAAAGATGAAAATGACACATTCAGACAGTACCAGCCAAGAAACTACAAAGAGCGATTCAAGTCTAGCTTCCTCCAGATGTTGAGGAGACGCAATCCAACACAAACAACCTGagagggataaaaaaaaaagctacatagtaacttactgtacattattcTATTCGGGCGGCAAGCCTGGCCATATGTCTGAATATGAGTGCTGTGAATGGATTACAAAGTGCACAAATCATTTCCATGTCATGAAAAGCTAGCAGCTTGATAGTGACAGTAGATGAAGCAAATAGGAGTGATCTGACAGAATATCTATAAAATCATAGTGCTTCTAATTGACGTATAATATTCTTGGTAGAAAtacttcaatattattattggttATCTGCATTTGCTATAAACTGGAATTCCTCAACCATTCAAAATTTTGAGcaaaaaagtatatttacaaaCCTTATGCA

Function

GO:

id name namespace
GO:0019229 regulation of vasoconstriction biological_process
GO:0003100 regulation of systemic arterial blood pressure by endothelin biological_process
GO:0014826 vein smooth muscle contraction biological_process
GO:0060585 positive regulation of prostaglandin-endoperoxide synthase activity biological_process
GO:0006874 cellular calcium ion homeostasis biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0003674 molecular_function molecular_function
GO:0005179 hormone activity molecular_function
GO:0031708 endothelin B receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080917-41 Predicted to enable endothelin B receptor binding activity and hormone activity. Predicted to be involved in several processes, including positive regulation of prostaglandin-endoperoxide synthase activity; regulation of systemic arterial blood pressure by endothelin; and vein smooth muscle contraction. Predicted to act upstream of or within regulation of vasoconstriction and vasoconstriction. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in neural plate; posterior lateral line system; pronephric duct; and telencephalon.

Ensembl:

ensembl_id ENSDART00000152959

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035966 lncRNA downstream 46420 37375914 ~ 37429416 (-) True XLOC_018265
TCONS_00035955 lncRNA downstream 796614 36675567 ~ 36679222 (-) False XLOC_018259
TCONS_00035956 lncRNA downstream 796632 36676420 ~ 36679204 (-) False XLOC_018259
TCONS_00035957 lncRNA downstream 798064 36676923 ~ 36677772 (-) True XLOC_018259
TCONS_00035950 lncRNA downstream 1051259 36419499 ~ 36424577 (-) False XLOC_018257
TCONS_00035972 lncRNA upstream 128871 37610051 ~ 37611589 (-) True XLOC_018268
TCONS_00035983 lncRNA upstream 449161 37930341 ~ 37933269 (-) False XLOC_018273
TCONS_00036899 lncRNA upstream 646717 38127897 ~ 38130828 (-) False XLOC_018274
TCONS_00036900 lncRNA upstream 646717 38127897 ~ 38131043 (-) False XLOC_018274
TCONS_00036901 lncRNA upstream 646717 38127897 ~ 38131820 (-) False XLOC_018274
TCONS_00035965 mRNA downstream 188729 37265356 ~ 37287107 (-) True XLOC_018264
TCONS_00035964 mRNA downstream 188899 37263663 ~ 37286937 (-) False XLOC_018264
TCONS_00035963 mRNA downstream 558166 36915143 ~ 36917670 (-) True XLOC_018263
TCONS_00035962 mRNA downstream 588320 36848698 ~ 36887516 (-) True XLOC_018262
TCONS_00035961 mRNA downstream 588571 36846052 ~ 36887265 (-) False XLOC_018262
TCONS_00035969 mRNA upstream 29887 37511067 ~ 37522569 (-) False XLOC_018267
TCONS_00035970 mRNA upstream 30275 37511455 ~ 37629084 (-) False XLOC_018267
TCONS_00035971 mRNA upstream 30911 37512091 ~ 37522569 (-) True XLOC_018267
TCONS_00035973 mRNA upstream 252001 37733181 ~ 37760413 (-) False XLOC_018269
TCONS_00035974 mRNA upstream 269339 37750519 ~ 37760481 (-) True XLOC_018269
TCONS_00035936 other downstream 1930642 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035933 other downstream 1964856 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035911 other downstream 2769264 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035885 other downstream 3524146 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 3774603 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035984 other upstream 449507 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 1037517 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00036007 other upstream 1424351 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00036008 other upstream 1551641 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036068 other upstream 3281132 40762312 ~ 40766351 (-) False XLOC_018321

Expression Profile

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