RNA id: TCONS_00035971


Basic Information

Item Value
RNA id TCONS_00035971
length 7989
RNA type mRNA
GC content 0.44
exon number 7
gene id XLOC_018267
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 37511067 ~ 37629084 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAGCCACATGAACCTATTGTTGGCCAAAAATGCACCAAGGAGCAACGGGAAAAGAACCCCTTACAAAGAAAATGGGTCTCTGAGCCATCTGCTGGAACAAAAAGAAATACCTTTGCAGACCCAGATATTAAAAGACACTCACATCGTGAGCAAAGTCTAACAGGTGGTACAAACCTTACTAGTTCAACTCAAAAGTACAGTTCTGGAAACCTGATGTCATCTGCAGTGACACATTCATCACAAGAAGGTCAGTTTCAACAGATCTTTCCTCGGCCTTACCCCTACCAGCTGCCACATTCTTACCCACAGGAGCCTTTCCTTGGTGGTACAAAGCCACAACCAGGGTTAGAGGCCCATGCCTGGTCTTTCTCTGGTCAACTGCAATCTCTGCCACCAGATGATATGTATCCGGTACACTCCCGCTCTCATGGAGTATTTCCTCGTCATAAGTCTCCTGCTGGTTTTGGCCAATTTTCCCAATCCGGACCCGAGCAGCCAGATGAAAGTCATAAGAAGGAACAAAAACCCAAGAAGCCAGGAAAGTACATATGTCACTATTGTGGTAGAGCATGTGCTAAACCCAGCGTGCTGAAAAAACACATTCGGTCCCACACAGGGGAGCGTCCTTATCCCTGTGTTCCATGTGGTTTCTCGTTCAAAACCAAGAGCAATTTGTATAAACATCGAAAATCGCATGCTCATGCCATAAAAGCAGGACTTGTTCCATTCTCTGATCTAGCAACCCGAACAGACACTGATCAAGCATCTTCAGTTGGGGAAGCAGAGGCACACTCTGATGGGGAGCAAAGCACTGACACTGATGAAGAAACAGCAGAAGGTGCAATGTTTCCTGAAAAATGTAGCCCTCAGATATCATTCGAGTCAGACAAGAGCCCGATGGAAAGGGGACCAGCATATGCAGACCCAGCAGAGGAATTGTCAGTGGCATCTATGAAAGTGCCTATCTTAATTGTTCCAAAACAAGGGGTGCCATCACCTGCTACTGAGTGCCCCCAGTTTACAGACATTAAAGGTTCAGTTATTGGTGGACAGATGGGCAGAGGAGATGAGTCTCATACGGTTAAACAGAGACTTGCCTTAAGACTCACTGAGAAGAAAGACCTGGATTCAGAGCAGTCTCAAAATCTCTTGAGCCCCCACAGTAAAGGTAGCACTGATTCTGGTTATTTTTCTCGCTCCGAGAGTGCTGAACAGCAGATAAGTCCACCTAACACCAATGTAAAGACATATGAAGAGATCATGTTTGGAAGAACTTGGTACCATAGAACTAACTCAAGATCTAGACAATCagtcacagttgggatggtggcAATTGCTAGTCAAGACACTAATATCAACAAGTCTAGTGCCATGCAGGAGTTGGCAATGGGAAAGATATCAGAGGGTCATGTATTTTATCAAAGTGATTGTGCAGAATCTCATTTAATCCCTGGATGTGACCCAAAGCATTATCATGCTGGCTCTTGCCAAACCAGCACAGGTCTTCTAGAAGCACCTTCTGATTCAGGGCCACTTATACGAAGTAATTCAATGCCAACACCTTCCCCAACCAACCTCAATGTACCACCAAATCTAAGAGGGAGTCACTCATTTGATGAGATGATGACCCAAGATGATGTCTTTTACACCGGAGCTGCAGGTCTAAAAAGATTGAGGAGACAGAGCGCCTTTGAACACTCTGTCCAGGAAGGGCATGGAGAGTCAGAAAGCTATGGGAAGATCACGGGTCCAAATTCAAGTTTAAGGGGGCATTTGATGCCAGAATTGAAAGGTTCTGGGTCAGAGATGGCTTGTCCAGAAGTACGCACAGCTTACACTTCATATGGTACAAAAGTGGGAATGACAGAGTTTACCACAAGAAAACGTCGCATGAAAAAGAGTGTCGGTGAAGAGGAAGACTGCCTTGGACAAGATGATGGCAGCCGTAGTGGCTCTACTGAAATGGCAGAGGAATATGACTTAAGGCAAGGAAGTCAAGATTCTTCTAAGGCTGTTCCAGCTAATAAGGGATCCATGTTTAGAGCACATAGCCCTTCAGACAGTTTTGATAGAGGTTCATGTATGACACCAGAGGATGTGGTCCATGTTCAAGATTCGGACACAAAGACTGGtggaaatgtaatttctgtcattCAACATACTAATTCGCTGAGCAGGCCAAACTCATTTGAGAAGACTGAATCAATAGAACACCCATTTTATCAGCCGGATAAGCATGCTGGACATCTTTCTGAACAATCAGACACAGAAAATATTGATGATGTTCAAAGCCCCGATTCTCATCATAGATCAGAAAGCATGGAACATCAGCAGCAGGGTGACAATGAACATGGATCTTTCTCTTCTAACACGCTTTATCATATGCCCCACAAACTTGTACGTCAACCAAACATTCAAGTGCCTGAGATAAGAGTTACAGAAGAGCCTGACAAACCGGAAAAAGAACCTGAGGTCCCAGCAAAAGAACCAGAGAAACATGTTGAAGAATTTCAGTGGCCACAACGAAGTGAAACATTGTCCCAGCTCCCTGCAGAAAAGCTACCTCCAAAGAAGAAACGTTTGCGTCTTGCAGATATGGAGCACTCTTCTGGAGAGTCCAGCTTTGAGTCCACTTGTACTAGTCTGTCAAGAAGCCCTAGTCAAGAAAGTAACTTATCTCATAGTTCAAGCTTTTCTATGTCATTTGACAGAGAGGAAAGCATCAAATCTGTATCCCCAACTAAACAAGATGAATTTGCTAAGCAGTCTGAGTTTTTAACTGTTCCAGGAAGTGGCCATTCTCTGTCAATACCAGGCCATCATCAAAGAGAAATGCGACGTTCTTCATCAGAGCAGGCACCCAGTGCTTTGCCCACTGAAGTACCAGAAATACGTAGTAAGTCATTTGACTATGGAAGTCTTTCAACTGGGTCGAGACAAGGAGAAGTATATGCGAGTGCTTCAGCTATGAAGGAGCGTAGACGAGGTTACCTTGTTAGACAGGCATCTCTCAGTGTTTATCCTGAAGTAGTAGTTCAAGAGCCAATTTCAGAGTTGTCCATCAAACAAGAGCATTCTGACCATGTTTCTCAAGCTGGTTTAACTGGTACATCCTATTGTGTAGCTAATGACTTGCCTAGACCCAGAAGAGGTGCACAGTCAGTTCTCGGATCACATCTCTTGCTGCAACAAAGCATCAGTGAGGACAGTCAATCTGAGGATCATTTCCAGAACACCCCTCGCTTGCCTGCACAGCTTTCTTCAGATAGTGAACATTCAGTGCATGAGCACATGACCCAAGATTTATTTCAGCATTCTTCACTTCAGAGCAGCATGGCATCCTCACCTTTCTTGCCATTTCAACCAATGCTCTGGCATCCTGAATCAACACAAAGAAACAAGCATAACCTGGCATTCCAGTCACATAATTTACAAAAGCTACATATCAAACAGCCAAATCTACAGCCTTTGCTACAGAAACCATACCAACCTTCTCATCAAATTCAAGTGCAAACAGACTCAAAAACTGATGGGGCAAGTCACAACTATCCATATCCTTCAAGGGCCTCCCCACAGCAGCTTGGGGTATTGTCGTCTAAAGTACTGACTACAAGCTTCCTACAACAAGTTCAGCCTACTTTTGCAACTCAAAACGTAGGTTCACCACAATCACTCCCTGGAATGCTGGTCCCAGTCAGGATCCAGACAAATGTGCCATCTTACGGTAGTGTTATGTATACAAGTGTTTCACAAATCCTTGTCACTCATGCTCAGAGCACAACTTCTATCAGAGTCATATGCACAGATAATGTGTCAACTGCATCAATAACAGGCACTGCATCAAAGCATCAAGTAGGCAtcaatttatcaaaaatattagGACATTCAGGAGGGTCTATAAATTTTCCAACATGGAAAGTTCCTGAATATTTACCTGGGAGCCTTAATACAGGAATTCCTTTGTCTTTGACGTCAGGGACTATCTCTACTACAGATGCTTCCTCTAATATTGGGGGGAGTAAGAGAATGTTGTCGCCAGCAAGCAGTCTTGAGCTTTTTATTGAAACCAAACAACAGAAACGGGTCAAGGAAGAGAAGATGTATGGCCAGATTGTGAAGGAGCTTAGTGCAGTTGAGCTGAGCAATTCCAGTGCACCAAAAGACAATGAGTCCactaaagctgaattttcaaacAGAGATGACTCAATAGATGAGCAAGAGAGGATGTCCTCGTCTCCACCATCTGACTTTTTGTCATCCAAATACCTTGGGTACCCGTCTGCACCTCGTTTGCCTGATGTGCCACCAAAAGACAACTTCATTCCACCCTTGCAAATTATTACAAATGTAACCAGCAGAGCAGATTCCCCAGAGGAGCTTGATGTTGATGAATCCACACCAGAGGCAAGCTCAAGCCCACAATCAGTGATGTCCTCAAGTGATACTCAAGAAGAATCCAAACAGAGCATGGGTAACAAGTTTCCAGTAAACATGCTAGTGCAGCTAGCTGCCAATCAAGGCGGTGGAGTCGTTGGTAGCACACTAATGCTGACTGACTTGGCAGATGTCCACCAGTTTTTTCAGTTCCCAAGTCTTCGCACACCAACCAGTGTCAGCTGGTGCTTCTTAAATTATACCAAACCAAATTATGCCCATACAACTCCCTTATCCTCTGTGTATGGTTCTTGGTGCATCAGCTCCTACAACCCCAACCCACTGAACCTCAGCACCAAGGCCACCCTGGCACTTCTTCGATCCAAACAGAGGAAGAATACAGAGATGTACACAATGGCTGCTATGCATCAACCTGGCACTGGAAAATTGGTTTCATCTCTGCGCTGGAAACAGAAGTTTGAGCAGTTGAAGCCAGAGCATATACAGTTGGATGTTGGGAAGTTTGCAAAGAAAATGAAGGGAATCAGCTCAAGAGACAGGGGGAAAGAGGACCATGGAGAAAAAGAGGCTTGTTCAAAACAGGCTGAACCCACTCGCATCAAAATCTTTGAAGGAGGGTACAAATCCAATGAAGACTATGTTTATGTGCGTGGCCGAGGCCGGGGAAAGTACATCTGCGAGGAGTGCGGGATCCGCTGTAAAAAACCAAGCATGCTGAAAAAACATattcgcacacacacagatgtcaGGCCATATGTCTGCAAGTTCTGCAACtttgcttttaaaacaaaagGAAATCTTACAAAACACATGAAGTCAAAAGCTCACATGAAAAAGTGCTTGGAGCTTGGAGTATCAGTGACTTCGGTGGATGAAACAGAGGCAGAAGAACTAGACACTACTGAGGAGGTTCAAAGAGGATCAGAGAAGAAGGGCATGTCAGAGATAATGGCAGAGCACCAGTTCTCTGATGCTGATGATTCGGAGGGTGCTGAAGAGGATGGTGATGAAGTTGATgacgatgaggatgatgatgatgattatgaggGTGATTCAACACCGAAGACACGCTCTCGAAGCACAAGCCCACAGCCATGTTCCATCCCCTCACTCGCTATCACTGCAATTGCCGCTTCACAGGAATCCATCCCAGAGGGTTTGGCCATCTCCAAACAGCCTATTTTCACTTACTTCACCAGTCTGCCCAGTATTCAGATCACTCAGCTCATGGCACCCAGTGAGAAAGCTGGAGAGATCCAGATGGCTGAATACCAGAAGCTCCTTCAAGGGGCTCTGGGTGAAGATCACAAAAACAGACTGGATGTGCCTAGCTCTATGGATGAAGACCTGGCTCTCTCTCCAGAACACAGCTCATCCTCCTTTGAATTCTCGTGCTCCCGGCTGTCTTCACCAGGCTGTGATTCCTCCCCACTTCGAGAAAGCTCACCTTCCTCTAGGCGGTATCTGTCCCCTCGAAGGGACCTCTCCCCGCGTGGCCGTTTGTCACCAAGGCGAGAAGCATCTCCCCTTAGGCATATCTCCCCCAGGCGGGATGTTTATAGAAGAGATCTGTCACCAAGGAGGGACCTTTCTCCAAGAGGACATCTCTCTCCCATCTCCCAAACAGGACGGCCAACATCCCCAGGAAGGGATCTCTCGGGCAGACTTTCTCCCAGAAGCCGCAGGGGCATGATCAGACCTGTGTCTCCCAGAAGGGGTCTCCATTATCAAAGTGGCCCATGGGCGCTCAGCCCCAGTCCACATGCAGAAATGATATCATTAAGCCAAAAGACCAAGGGCCATGCAGAACCAGAGATGGTAAGTTATTGTTTTTGCTCCATAAGCAGTAGCTCCAGTTATGCTCCCAGCATCAACCAGGGATTATTTAGCCACCTTCCTCTGCACTCCCAGCAACAGATCCGCACTCCGTTCTCCATGATCCCCATCGGCGGCATCCAGATGGTCCATTCTGTGCCCACTTCTGTCACAGGTCATGCCCACTCCACGCGCCTTCCCCTACAGAAGAGCACCTCGGAGGAGTCCAGCACCAGTGAGGTGTCCTTCCACCTCTCTGAGGGCAGAGGGCCCGCCAGCAAAGGCTCAGAAGACTCACCCCAATCCCAGGAAAAATCCACATCCCCCAAGGCTCCATCACTTTCCCCACAAAAGTCACGAGAGGACAGCACCGAAATGTCAGACAAGGAGAGCAAACAAGAAGAGTGCATCCAAACATGCACTAAGGCGATAGCGTCACTGTGCATCGCCTCAGAGGAAACGACGGACAGACAGCCACTTCCCATTGATCCTTACCATCAGCGCACTTTATCTCAGTCACCTGCAGCTCAGCAAGACTGTGCGGCGAGAGCGCAGCACTACTGCAGCTCAGAGATCAGCCACCCCCTACACTCCAGAGCAGAGAGCAGTGTGTCTGCCACATCAAAGACTCCCACAGCAAGCCATCCCACTCTCTACAACACAGAGACAGCAGAGCGAGTGTGAACAAGGTCAAATGAGAGAGTGGTATCAcaggttttatatttacacatgtaTATCCATGCAAACAAGATCAGTCTAAAACACAAGTGAACTGATTCAGTGGTTTCGATGTACATTTATAGCATGCCTTTTATAAGACGGTTTGCTATCTTAACTATAATGACTTTCTTATTTAAAGTttcaaagaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaattttaacttATATATGAGCCTGACCAAAATTGCTTATGGACTTTGTCTGGTACTTTTCAAATGTACAGATGTGTGTGCCTTTTCTTTACTTTTTGCTTATATTCTTATAAGCATTAAACAGGAAgtcatgtaaatatatatatcaagTTTTGTGTATCCCGCTTTGTAATAAATGCAATTTACCGTCTTTTTGGACACTTTCGGTCTGAATGATGTGAAGTATCAATACATGTAAGGTTGcactaaaacatatttttatatgtGTGAAATTAAATGGCTTTTGTGTACAGCAGCAATTCTATAATACTATTTATTGTATCATGTTtcataaattgtacatttttcttAATGTCGTGGATGCCTTTTCTATGTAAAGCATGGGTTTTGCTATTGCATAATTAGAGCAAAAATTATGTACATGTAATATGGCTTTATATATTAGAAGTATGTGTGCATATACTTCCCAGTAAACTCGCTTTATTTAGAATAATTCTATATAATTTAAGTAAATGTTTATATACCTAGTATacagaaaaactatatatatatatatatatatatatatatatatatatatatatatatatatctgcacaTGTTTTAGATTGACAACCACATACTCTACGGTAGTTGGTTCTAAGTGCTTGTATCCTTCTCTTTCCTACTGGCTGATAGGCTACACTAGTTGTGATTTCACCCGTTCACATTTGAAATGTAGAACTGTTCAGCATTAAGTGAATCAACTTTCGCACTTCTGCATTTCCTCCACCACTTACTGAGGTAGATGTGAAAGGTATTTGGATCTTCTGTGAATATGATG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-354 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in brain; hatching gland; paraxial mesoderm; and tail bud. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 43. Orthologous to human HIVEP2 (HIVEP zinc finger 2).

Ensembl:

ensembl_id ENSDART00000058502

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035966 lncRNA downstream 82675 37375914 ~ 37429416 (-) True XLOC_018265
TCONS_00035955 lncRNA downstream 832869 36675567 ~ 36679222 (-) False XLOC_018259
TCONS_00035956 lncRNA downstream 832887 36676420 ~ 36679204 (-) False XLOC_018259
TCONS_00035957 lncRNA downstream 834319 36676923 ~ 36677772 (-) True XLOC_018259
TCONS_00035950 lncRNA downstream 1087514 36419499 ~ 36424577 (-) False XLOC_018257
TCONS_00035972 lncRNA upstream 87482 37610051 ~ 37611589 (-) True XLOC_018268
TCONS_00035983 lncRNA upstream 407772 37930341 ~ 37933269 (-) False XLOC_018273
TCONS_00036899 lncRNA upstream 605328 38127897 ~ 38130828 (-) False XLOC_018274
TCONS_00036900 lncRNA upstream 605328 38127897 ~ 38131043 (-) False XLOC_018274
TCONS_00036901 lncRNA upstream 605328 38127897 ~ 38131820 (-) False XLOC_018274
TCONS_00035968 mRNA downstream 21479 37476176 ~ 37490612 (-) True XLOC_018266
TCONS_00035967 mRNA downstream 30911 37475836 ~ 37481180 (-) False XLOC_018266
TCONS_00035965 mRNA downstream 224984 37265356 ~ 37287107 (-) True XLOC_018264
TCONS_00035964 mRNA downstream 225154 37263663 ~ 37286937 (-) False XLOC_018264
TCONS_00035963 mRNA downstream 594421 36915143 ~ 36917670 (-) True XLOC_018263
TCONS_00035973 mRNA upstream 210612 37733181 ~ 37760413 (-) False XLOC_018269
TCONS_00035974 mRNA upstream 227950 37750519 ~ 37760481 (-) True XLOC_018269
TCONS_00035975 mRNA upstream 290130 37812699 ~ 37813863 (-) True XLOC_018270
TCONS_00035976 mRNA upstream 291776 37814345 ~ 37820939 (-) True XLOC_018271
TCONS_00035977 mRNA upstream 308783 37831352 ~ 37831923 (-) False XLOC_018272
TCONS_00035936 other downstream 1966897 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035933 other downstream 2001111 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035911 other downstream 2805519 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035885 other downstream 3560401 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 3810858 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035984 other upstream 408118 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 996128 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00036007 other upstream 1382962 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00036008 other upstream 1510252 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036068 other upstream 3239743 40762312 ~ 40766351 (-) False XLOC_018321

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU371 True 5600 lncRNA 0.45 1 CM030121.1 2080746 ~ 2086345 (+)