RNA id: TCONS_00035972


Basic Information

Item Value
RNA id TCONS_00035972
length 399
lncRNA type sense_intronic
GC content 0.52
exon number 2
gene id XLOC_018268
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 37610051 ~ 37611589 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTCTAGAGGGGGTAGGCCGCACGATGAGTGCCCTGCTGGGAATGGAACACCTCCGACACTGGCCTGTTGGCTCATCTTCCCAGGTCATTAATCCAACATTCTGTCATTAGCGGACCCACGCTGTTCCCCAGCAGCTGTCCTTCACACTTGATCGCAGTACATTGAAGTGCTTATTAAACAGAGCACAGGGCTGGACGGTGGGCTTCTGTTGACACAAACGAGCGCTGGGTGACCACTGGGCCTCCCCGGAATCATGAAGGGTGCTCGCCATTCATTAGCGGTGCTCTCTCCAGCTTAAGATGCAAACAAGTGGCgctttaagatgtTTGTTTTTGGGTCAGGAGACTAACAACAGCACACATGGGGATTAGGAAGCGCTTGCTTCATTTAAGCAAACA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000153107

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035966 lncRNA downstream 180635 37375914 ~ 37429416 (-) True XLOC_018265
TCONS_00035955 lncRNA downstream 930829 36675567 ~ 36679222 (-) False XLOC_018259
TCONS_00035956 lncRNA downstream 930847 36676420 ~ 36679204 (-) False XLOC_018259
TCONS_00035957 lncRNA downstream 932279 36676923 ~ 36677772 (-) True XLOC_018259
TCONS_00035950 lncRNA downstream 1185474 36419499 ~ 36424577 (-) False XLOC_018257
TCONS_00035983 lncRNA upstream 318752 37930341 ~ 37933269 (-) False XLOC_018273
TCONS_00036899 lncRNA upstream 516308 38127897 ~ 38130828 (-) False XLOC_018274
TCONS_00036900 lncRNA upstream 516308 38127897 ~ 38131043 (-) False XLOC_018274
TCONS_00036901 lncRNA upstream 516308 38127897 ~ 38131820 (-) False XLOC_018274
TCONS_00036902 lncRNA upstream 516308 38127897 ~ 38132018 (-) False XLOC_018274
TCONS_00035969 mRNA downstream 87482 37511067 ~ 37522569 (-) False XLOC_018267
TCONS_00035971 mRNA downstream 87482 37512091 ~ 37522569 (-) True XLOC_018267
TCONS_00035968 mRNA downstream 119439 37476176 ~ 37490612 (-) True XLOC_018266
TCONS_00035967 mRNA downstream 128871 37475836 ~ 37481180 (-) False XLOC_018266
TCONS_00035965 mRNA downstream 322944 37265356 ~ 37287107 (-) True XLOC_018264
TCONS_00035973 mRNA upstream 121592 37733181 ~ 37760413 (-) False XLOC_018269
TCONS_00035974 mRNA upstream 138930 37750519 ~ 37760481 (-) True XLOC_018269
TCONS_00035975 mRNA upstream 201110 37812699 ~ 37813863 (-) True XLOC_018270
TCONS_00035976 mRNA upstream 202756 37814345 ~ 37820939 (-) True XLOC_018271
TCONS_00035977 mRNA upstream 219763 37831352 ~ 37831923 (-) False XLOC_018272
TCONS_00035936 other downstream 2064857 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035933 other downstream 2099071 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035911 other downstream 2903479 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035885 other downstream 3658361 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 3908818 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035984 other upstream 319098 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 907108 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00036007 other upstream 1293942 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00036008 other upstream 1421232 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036068 other upstream 3150723 40762312 ~ 40766351 (-) False XLOC_018321

Expression Profile

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