RNA id: TCONS_00003613


Basic Information

Item Value
RNA id TCONS_00003613
length 3372
RNA type mRNA
GC content 0.52
exon number 29
gene id XLOC_001812
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 2600830 ~ 2667208 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAAAGTGACCGAGCGTGGATATAAACACGAGCTGCTGATTTGTAATGAAAGACAGTCAGATTTGAAGTTTGTAAGTTCACGTAGATCATTAGACAGAGAGATAATGGAGGAAAACCTGCCTGAAGATCTGGCGAATCTGTCTGAGCTGGACGAGAAATGTTTGCTGGAGGTTTTGACTGGACGTTTCACACAGAACCTCATCTATACGTATATAGGGGACATCTTGGTGGCTATCAATCCATTTAAATATCTTTCCATCTATGAAAAAGAGGTATCCCAGCGTTATAAGTGCCATGAGAAGAAGTCTTTACCCCCGCATATATTCGCTGTGGCGGACCGAGCCTATCAGTCCATGCTGGGACGTCTAGCTATGGGACCTAAGAATCAATGCATCGTCATCAGTGGTGAGAGCGGCGCGGGTAAAACGGAGAGCACCAAACTGCTGCTGAGACACATCATGGAGCTCTGCAAGGCCAACTCCCAGCTGGAGCAGCAGATCCTGCAGGTGAATCCGCTTCTGGAGGCCTTTGGGAATGCTCAGACGGTCATGAATGACAACAGCAGTCGCTTCGGGAAGTACATCCAGCTCCGTTTCCAGAACTCCTCAGttaAAGGAGCCAAAATCAATGAGTACCTGCTGGAGAAATCTCGCGTGGTCCACCAGGACCAGGGGGAGCAGAACTTCCACATCTTCTACCTCATGTTGGCTGGAATTTCATTGGAGGATAAGGAAATTTACGGCCTTCTGGACCCGACGCTGTACCGgTATTTGAATGGCAGGTTTGGGCAAGAAGACGTAGTGCAGACGTGGCGCGTGAAATATGCAGAGGTGTGTAACGCCATGGACATGGTAGGATTCGAAGAGcagGAGAAAGTGGACATGATGACCATTCTCGCTGGCATTctgtctctgggaaacatcacgTTCGAGACGACCGACAGTGACGCTCTGAAAGTGTCTGAAGCGTCACGTGGATGGCTGAAAGCTACTGCTGGTCAGTTTGGCGTCCAGGAAGAAGACCTGCTGAAGAGTCTGACCTGCACCACGTCAATGACTCGAGGAGAAGCCATTCAAAGACTCCACAACCAGCAGCAGGCCGAGGATGCCAGGGACTCCATCGCTAAAGTGGCCTACGGTCGAGTGTTTGGGTGGATCGTCAGTAAAATCAACGAACAGCTCGCTCCAAAAGTAGACTTTGATGTGGAACTCAACGAAATAgGAATCCTCGACATCTTTGGCTTTGAAAACTTTGCTGTAAACCGATTTGAGCAGCTCTGCATTAATCTGGCTAATGAACAGCTCCAGTATTTCTTCAACCACCACATTTTTCTGATGGAGCAGAAGGAATATAAAGAGGAAGGAATCACGTGGGAGACCATAACCTACAAGGACAACAAACCCATACTGGACCTGTTTCTCATGAAGCCCATTGGGATTCTCTCACTGCTGGATGAACAAAGTGCCTTTCCTCAGGCCACTGATCGAGATTTTGTTGACAAGTTAAACAGCAAGTTTAAATCGGCTCCAAACTTCGAAGTGGTGCGAAATCACACTCCTCTGTTCACTGTTGTGCACTACGCTGGGAAGGTGCAATATAATGCGAGTGGTTTTCTGGAGAAAAATAGAGACACGATTCCAGCCAGCATTCGCGAGCTCTTCATTAACAGCGTCACTCCTCTCCTCAGCGTTTTATTCGCAGCCACAATCTCCAGAACGGGCACTCTAATGCCAAGGAAAGCCAAGTTGCAAGTTTCAGATGATAACTTTAACTCCACCAGGAAGCAGTCTGTTGGTGCACAGTTCAAGCATTCTCTGGCGGTTCTGATGGAGAAGATGTTTGCTGCCAGTCCTCACTTCGTCCGCTGCATCAAACCCAACCGCAGCAAGCAGCCCGATCAGCTGGACAGTAAACTGGTCCTGGATCAGCTGCGGTACAATGGACTGATGGAAACGATCCGGATCCGCCGGGATGGTTTCTCGTGGCGTCCGACATTTAGGGAGTTTGCCGAGAGGTACAACATTCTGCTGCTGAAACCGGATCTGCCCACAGACAAGAGCAGttgtATGTCAATCCTCAACAGCACAGAACTGTCAGGATGGAAGTGCGGATCATCGCGGCTGTTTTTTAAGCTCTGCCACCAGGTGGAGTTGGCCAATTTGCTGGACAGACTGGGCAGAGCGGCGCTTGTCATTCAGAAAAATTTCCGAGCCCGGACCTGCCGCAGGAAGTATCTGTGTCTGCTGGCGGAGCTGCGGCGTCAGCGTCAGGCTCAGCGGGAGCGCGAGGAGCGTGAGGAGGAGGAGAGGAGACGCCAGGAGGAGGAGAAGAGACGGCAGCAGCAGCAGGAGGCGGAGAGGAAGAGGCGTCTGGAGGTGGAGCAGGAGAACCTGAGACCAGCGTCTCCACCGGTGCCTTTGCCCAGGAAGAAAAAGCCGGAGCCCAGGCCTCGCTCGGTCCTCAGCAGCATCAGTAAAACAGCAAGCGTGGCTCCAGTACCACGACCCCGCAGCAAGCTTTTAGAGGCGACTCCATTTGACAACGATCTGAACGAGAACTTCCACCTGGACGCGTCTCTGATGCTGCAGCCAATCGATGAAGAGCGCATTAAAGAGAAGCACCTGAAGAAGAGCAACACTATTCGCTGGTTTAGAGAGACGCAGGTGCGCAAGCTGACCCGGGATGGCTCTTTCCCACACTGGTTCCACGGCATGATCACACGGAGGCAAGCGGAAGATCTTCTCATCGACAAACCTCTAGGCTGCTTCTTGGTGCGAGTCGGTCAAAGTCGTGAGGGTTTCACTCTGACATTCAGAGGTGCCGATCGTTGTCGTCACTACATGGTGGAGATGCAGAGCAATGGGAAGTATGTGATCCTGGGTGAAGATCGAGCTCATTCTTCTCTCACAGACCTGGTCCAGTACCACACTCAGGTGGGCATCAAGCCCTTCATGGAGCTGCTGACGGTGCCATGTGGACAGATGTGCGATCAGGAGCCGGACTATGAGGAGCTCAAGGCTTTTTCCTCGGCGGTGGAGAGCGTTGACGGTCCCGCTGAAAACATGGACACGGGGTCAAATAAAGTGCACTTGCAGATGCAGAGACTGTTCCTGCCACCAGGAGGAAACTCAAACCATGAGCACCACCGAGCCCCAGTGCTGAAGCGCATCTCTGACCGCCGCAGACGAATGGAGGCGGCACAAACCGAACGCAAGGAGGaggatctgaccaatcagagcaggccTTTCCCTCGACTCTACCCATCAATACGGCTAGCCATGAGGGAGATCCAGCAAATCCAAGAGCAGAGCCAAGAACAGATCCAGATTCCCTCCAGCAAAGACCTGAGCTCCTGGAAGAGGACGGGTGAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000101012

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005809 lncRNA upstream 96788 2499533 ~ 2504042 (+) True XLOC_001807
TCONS_00005808 lncRNA upstream 162922 2402308 ~ 2437908 (+) True XLOC_001806
TCONS_00005807 lncRNA upstream 196052 2402308 ~ 2404778 (+) False XLOC_001806
TCONS_00003604 lncRNA upstream 609362 1982550 ~ 1991468 (+) False XLOC_001804
TCONS_00005670 lncRNA downstream 310327 2977535 ~ 2979504 (+) True XLOC_001823
TCONS_00005810 lncRNA downstream 595370 3262578 ~ 3269818 (+) True XLOC_001827
TCONS_00005671 lncRNA downstream 632676 3299884 ~ 3312438 (+) True XLOC_001828
TCONS_00005672 lncRNA downstream 669647 3336855 ~ 3341616 (+) True XLOC_001829
TCONS_00005811 lncRNA downstream 1189859 3857067 ~ 3857885 (+) True XLOC_001834
TCONS_00003612 mRNA upstream 5099 2587234 ~ 2595731 (+) True XLOC_001811
TCONS_00003611 mRNA upstream 15205 2582254 ~ 2585625 (+) True XLOC_001810
TCONS_00003609 mRNA upstream 25443 2568793 ~ 2575387 (+) False XLOC_001809
TCONS_00003610 mRNA upstream 25443 2568917 ~ 2575387 (+) True XLOC_001809
TCONS_00003608 mRNA upstream 50452 2529037 ~ 2550378 (+) True XLOC_001808
TCONS_00003614 mRNA downstream 2197 2669405 ~ 2671295 (+) True XLOC_001813
TCONS_00003615 mRNA downstream 17750 2684958 ~ 2691375 (+) True XLOC_001814
TCONS_00003617 mRNA downstream 48340 2715548 ~ 2755378 (+) False XLOC_001816
TCONS_00003618 mRNA downstream 75291 2742499 ~ 2751447 (+) True XLOC_001816
TCONS_00003619 mRNA downstream 132077 2799285 ~ 2801857 (+) True XLOC_001817
TCONS_00003605 other upstream 333473 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003597 other upstream 935792 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003590 other upstream 1795471 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003583 other upstream 2093574 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003569 other upstream 2388883 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003616 other downstream 21357 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003633 other downstream 317836 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003646 other downstream 741575 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003658 other downstream 1826069 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003668 other downstream 2318842 4986050 ~ 4987483 (+) True XLOC_001850

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000178_00723152_00735586.mRNA True 1404 mRNA 0.41 6 CI01000178 723152 ~ 736072 (+)