RNA id: TCONS_00035978


Basic Information

Item Value
RNA id TCONS_00035978
length 475
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_018272
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 37831352 ~ 37831939 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGTTCCACAAGCGTGTGACCATGGTTACAGTTGTCTGAATGGACACATACTATTTCTGCTCAACAACTACGCGTCTACAATTCATAAAATGTCGAAGCAAGAGCGACTGTACGAGTTGAATATGCATAGAGAAACGTGGTGTCGTGTGGAGACAACGAGCAAGTACTGGAATTTGCCTGAAAGGAAACATTTTCGTTGTCACCTGCAGAACACCTGCGACATCAGCGCGCTGCAGACTGCGAGCCCCGAGCAGCGCTCCGCCTGGATGAGCAGCGGAGGACAAAACACCGCACACCCCGAGCGGAGACACTTCGAGGACAGCTATAGAGCTCATCTGGTATGAGGAGCTGCAGTCAACCTCTGTGGAATAAAGTCGTCCAgacagaaataaacatttataaatacaatgaaatatcaaatattgtaaataattaatacTATACAGTGAATTAAACAATTTTGAGTTAAATGTA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-353 Orthologous to human SPATA45 (spermatogenesis associated 45).

Ensembl:

ensembl_id ENSDART00000142364

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035972 lncRNA downstream 219763 37610051 ~ 37611589 (-) True XLOC_018268
TCONS_00035966 lncRNA downstream 401936 37375914 ~ 37429416 (-) True XLOC_018265
TCONS_00035955 lncRNA downstream 1152130 36675567 ~ 36679222 (-) False XLOC_018259
TCONS_00035983 lncRNA upstream 98402 37930341 ~ 37933269 (-) False XLOC_018273
TCONS_00036899 lncRNA upstream 295958 38127897 ~ 38130828 (-) False XLOC_018274
TCONS_00036900 lncRNA upstream 295958 38127897 ~ 38131043 (-) False XLOC_018274
TCONS_00036901 lncRNA upstream 295958 38127897 ~ 38131820 (-) False XLOC_018274
TCONS_00036902 lncRNA upstream 295958 38127897 ~ 38132018 (-) False XLOC_018274
TCONS_00035976 mRNA downstream 10413 37814345 ~ 37820939 (-) True XLOC_018271
TCONS_00035975 mRNA downstream 17489 37812699 ~ 37813863 (-) True XLOC_018270
TCONS_00035974 mRNA downstream 70871 37750519 ~ 37760481 (-) True XLOC_018269
TCONS_00035973 mRNA downstream 70939 37733181 ~ 37760413 (-) False XLOC_018269
TCONS_00035971 mRNA downstream 308783 37512091 ~ 37522569 (-) True XLOC_018267
TCONS_00035980 mRNA upstream 88157 37920096 ~ 37933255 (-) False XLOC_018273
TCONS_00035981 mRNA upstream 93219 37925158 ~ 37933237 (-) False XLOC_018273
TCONS_00035982 mRNA upstream 96460 37928399 ~ 37933255 (-) False XLOC_018273
TCONS_00035985 mRNA upstream 554343 38386282 ~ 38449903 (-) False XLOC_018278
TCONS_00035986 mRNA upstream 555242 38387181 ~ 38446891 (-) True XLOC_018278
TCONS_00035936 other downstream 2286158 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035933 other downstream 2320372 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035911 other downstream 3124780 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035885 other downstream 3879662 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035881 other downstream 4130119 33701117 ~ 33701233 (-) True XLOC_018210
TCONS_00035984 other upstream 98748 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035989 other upstream 686758 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00036007 other upstream 1073592 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00036008 other upstream 1200882 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036068 other upstream 2930373 40762312 ~ 40766351 (-) False XLOC_018321

Expression Profile

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