RNA id: TCONS_00036917


Basic Information

Item Value
RNA id TCONS_00036917
length 2474
lncRNA type inter_gene
GC content 0.39
exon number 10
gene id XLOC_018274
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 38127897 ~ 38140616 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGTTTCTCTGTGGAGATATGCTTGAAGAGCTGGAGCTCAATTGGCATGCAGAAACAGAGaaacacacctcagcaatgacaaATTGGAGTGGAGAAATAAGGGATTCACAAACCTCAGCAAAGACAGGAACCTGATTGTCTGGTATTACCGATATAtgatagatgtccttccaagaggaagggggtggtggtgggcatagatagTTATTTAAGTGTCCTGTCGGTGGAAGGTGTTTCTTTCAGCCAATGGAAaaaagaggaagaagaggaaaaCTCATAATGAGAACAGTGGAGATATGCTTGAAGAGCTGGAGCTCAGTAAGCAGATTGGAGTGAACTGTATGGAGAAATACAGGAATCACACTTCAGCAACGATTGAAAACtgcatggatgtatggatggaaggatgggttGTCTGTGGCAGgggtttctttttcaggtaatggacacacaacagacagaagaaAGAGAATCATGAGTTTCTCCGTGGAGATATGCTTGTAGAGCTGTAGCCcaattgGCATGCAGAAACAGAGAAACACTCCACAGCAATGACAAGTACATCAATATAAACGAGattGGAGTGGAGAAATAAGGGATTCACAACCCTCAGCAAAGACAGGAACCTGATTGTGTTGTATTACCAATATAtgatagatgtccttccaagaggaagggggtggtggtgggcatagatagTTATTTAAATGTCCTGTCGGTGGAAGGTGTTTTTTTTCAGCCAATGGAATaaaagaggaagaagaggaaaaCTCATAATGAGAACAGTGGAGATATGCTTGAAGAGCTGGAGCTCAGTAAGCAGATTGGAGTGAACTGTATGGAGAAATACAGGAATCACACTTCAGCAATGATTGACAactgaatggatgtatggatgaaagGATGGGTCGATAGATGAATGTATTGTCTGTGGCAGGGATTTCTTTTTCAGATAATGGACATACAACAGCAAGGAGAGGGAGATTCACAACAGGATTGGTGGAGATATGCTTGAAGAGCTGGAAATCAGTAACCAGattgtcatggagcatgtggagaaacTGGGAAACACTTCAGCAATGACAAGTACATAATGAGATTGAAGTGGAGAAACGAGGGAATCATACACGTCAACAATGACAGGAAACTGATGGTCTGGTATTGCCTATACAtgatagatgtccttccaaaaggaagggggtggtggtgggcatagatagttagatagactTCTTGTCTGTAAAAGGTAATGAACACACAACAGGCATAAAAAGGAGAATTACAAGAGGATCAGTGGAGATATGCTTGAAGAGCTGGAGCTTAGCAAATACATactgtagagctctgttagtcttgTCTTTGCCTTTTTGCAGGTTGGAGtggagcatgtggagaaacaaggaaatcacacacctcagcaatgccTGGAAACTGATGGTTAGGTTAGATATttcctggatggatggatgaatgtttaAATAGACGACCTTCCaagtggaagggggtggtggtgggcatagatagTTAGATAGGTGTCTGTGGAAGGTTTTTTCTTACAGACAGTGGAACCACAAAAGGCAGAAGACGGAGAATCACAAGAGTGGAGATATGCCTGAAGAGCTGGAGCTCAATTGGCATGGAGGATGTGGAGAAACAGGGAAACACAACTCAGCAATGACAAGTACATCATAATCATAGGAGAAGGCTAATCTTTCCCCTGGCCACAGAACACAGGCTTGAGACTAGCAAAGAAAAAATTTCCTGTGGTATATTCTCACTCAAACCACTGCCTGCTTCTTTGCTTATGGAGAGAAAAGCTGCTCATATCTGCTGGTTCTTGATCAATATTTGATATCCAGCTTGGCTCTCTAGACCAGAAGCTGTGGATATGAAATATCAAGGAAAAATTTAGATGAAATTAAAAGCCTAGAATTTAGAAATTTAACTTATCTTGAACAGAAATTGATAGATGATTTAACTGCATTAGAAAAGGCAAAGgctgttttttaattatattggTCTGCGATAGCAAATCACACACGGTATTTATTTCTAGCTAAAATGAACAGTGCTTTGTTAGATGCTCTCTTTAAAAATTTGcactaaactattatttttactttGCATCATCATCTTGGAAATAAAGCTTTGTGTCTTTGCACCTGAATAAGTCatgatttgtgtatttaatttcGTGTTTGAGCAACATCTGTTTCAAAATCTTGCAAATTCTGTGGTGTTTTAATTAGTTTCCATTTGAGAAAAGTTGAgcatatgttgttaaattaataattatttaacaagTGTTGATCGGATTTGTACTTATTTCAACAAATGTTATATATTGAATAAAAGCATATCAATTCTAATGGTGTCATTGATTCTGTGATTTATCCATATAACTTTACTTTGCACAAAAGTGTTAAAAGATGTGTTCTATTATTAGAATGTTCTTCacaataaccaaaatacag

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0003015 heart process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035983 lncRNA downstream 194628 37930341 ~ 37933269 (-) False XLOC_018273
TCONS_00035972 lncRNA downstream 516308 37610051 ~ 37611589 (-) True XLOC_018268
TCONS_00035966 lncRNA downstream 698481 37375914 ~ 37429416 (-) True XLOC_018265
TCONS_00035956 lncRNA downstream 1448693 36676420 ~ 36679204 (-) False XLOC_018259
TCONS_00036926 lncRNA upstream 315 38136271 ~ 38136792 (-) True XLOC_018275
TCONS_00036489 lncRNA upstream 1293 38137249 ~ 38138845 (-) False XLOC_018274
TCONS_00036927 lncRNA upstream 2270 38138226 ~ 38140250 (-) True XLOC_018274
TCONS_00036928 lncRNA upstream 107336 38243292 ~ 38244961 (-) True XLOC_018276
TCONS_00036929 lncRNA upstream 222405 38358361 ~ 38373094 (-) True XLOC_018277
TCONS_00035980 mRNA downstream 194642 37920096 ~ 37933255 (-) False XLOC_018273
TCONS_00035982 mRNA downstream 194642 37928399 ~ 37933255 (-) False XLOC_018273
TCONS_00035981 mRNA downstream 194660 37925158 ~ 37933237 (-) False XLOC_018273
TCONS_00035978 mRNA downstream 295958 37831352 ~ 37831939 (-) False XLOC_018272
TCONS_00035985 mRNA upstream 250326 38386282 ~ 38449903 (-) False XLOC_018278
TCONS_00035986 mRNA upstream 251225 38387181 ~ 38446891 (-) True XLOC_018278
TCONS_00035988 mRNA upstream 381485 38517441 ~ 38525467 (-) False XLOC_018280
TCONS_00035992 mRNA upstream 459979 38595935 ~ 38610396 (-) False XLOC_018281
TCONS_00035993 mRNA upstream 459979 38595935 ~ 38617766 (-) False XLOC_018281
TCONS_00035984 other downstream 193582 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035936 other downstream 2582703 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035933 other downstream 2616917 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035911 other downstream 3421325 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035885 other downstream 4176207 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035989 other upstream 382741 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00036007 other upstream 769575 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00036008 other upstream 896865 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036068 other upstream 2626356 40762312 ~ 40766351 (-) False XLOC_018321
TCONS_00036069 other upstream 2626376 40762332 ~ 40766350 (-) False XLOC_018321