RNA id: TCONS_00003616


Basic Information

Item Value
RNA id TCONS_00003616
length 117
RNA type rRNA
GC content 0.55
exon number 1
gene id XLOC_001815
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 2688565 ~ 2688681 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCCACGGCCAAATCCCCCTGCAGCACAAgtccagttactcactgaagctaagcagggctgaggctggtcagtacctggatgggagaccacatgggaacactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000177938

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005809 lncRNA upstream 184523 2499533 ~ 2504042 (+) True XLOC_001807
TCONS_00005808 lncRNA upstream 250657 2402308 ~ 2437908 (+) True XLOC_001806
TCONS_00005807 lncRNA upstream 283787 2402308 ~ 2404778 (+) False XLOC_001806
TCONS_00003604 lncRNA upstream 697097 1982550 ~ 1991468 (+) False XLOC_001804
TCONS_00003603 lncRNA upstream 697097 1982550 ~ 1991468 (+) True XLOC_001804
TCONS_00005670 lncRNA downstream 288854 2977535 ~ 2979504 (+) True XLOC_001823
TCONS_00005810 lncRNA downstream 573897 3262578 ~ 3269818 (+) True XLOC_001827
TCONS_00005671 lncRNA downstream 611203 3299884 ~ 3312438 (+) True XLOC_001828
TCONS_00005672 lncRNA downstream 648174 3336855 ~ 3341616 (+) True XLOC_001829
TCONS_00005811 lncRNA downstream 1168386 3857067 ~ 3857885 (+) True XLOC_001834
TCONS_00003614 mRNA upstream 17270 2669405 ~ 2671295 (+) True XLOC_001813
TCONS_00003613 mRNA upstream 21357 2600830 ~ 2667208 (+) True XLOC_001812
TCONS_00003612 mRNA upstream 92834 2587234 ~ 2595731 (+) True XLOC_001811
TCONS_00003611 mRNA upstream 102940 2582254 ~ 2585625 (+) True XLOC_001810
TCONS_00003609 mRNA upstream 113178 2568793 ~ 2575387 (+) False XLOC_001809
TCONS_00003617 mRNA downstream 26867 2715548 ~ 2755378 (+) False XLOC_001816
TCONS_00003618 mRNA downstream 53818 2742499 ~ 2751447 (+) True XLOC_001816
TCONS_00003619 mRNA downstream 110604 2799285 ~ 2801857 (+) True XLOC_001817
TCONS_00003620 mRNA downstream 118455 2807136 ~ 2836641 (+) False XLOC_001818
TCONS_00003621 mRNA downstream 118495 2807176 ~ 2838190 (+) True XLOC_001818
TCONS_00003605 other upstream 421208 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003597 other upstream 1023527 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003590 other upstream 1883206 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003583 other upstream 2181309 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003569 other upstream 2476618 211782 ~ 211947 (+) True XLOC_001770
TCONS_00003633 other downstream 296363 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003646 other downstream 720102 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003658 other downstream 1804596 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003668 other downstream 2297369 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003675 other downstream 2447161 5135842 ~ 5147582 (+) True XLOC_001854

Expression Profile

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