RNA id: TCONS_00036489


Basic Information

Item Value
RNA id TCONS_00036489
length 1394
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id XLOC_018274
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 38127897 ~ 38140616 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGTATTAAGAATAATTCTTGACTTGTTATACTTTTCTTGTCTTTTGCAGTGGAGTGGACCGCATGGAGAAAAAcgggaatcacacacctcagcaatgactggaaactgcatggatggatggatggatggatggatgaatggatgtctTGTCTGTGGCAGGGGTTTCTTTTTCAGGCAATGGACATACAACAGGGAGGAGAGTGAGATTCACAAGAGGATAGATGAAAATATGCTTGAGAAGCTGGAGCTCAGAAAGCAGattgGCATGCAGAAACAGAGAAACACACTTCAGCAATGACAAGTACATCATTATAAATGAGTCACTACCTTAAATCTTTAACGTGAATGAAATTAACTTTAAAACAGAGTTTTAATTTTTACAGAGTAAGTGAAGATAGGGTATTTCCTtaagacagacggacggacggacggacggacggacggacggacggacagacagacagacagacagctagatagatagatagacagtccTTAACAGATATGTTTGCAGGTAATGGACAAGTAAGCAGAGCTTCATTGattctgtctttgtcttttacagattGGAGTGGAGAAATAAGGGATTCACAACCCTCAGCTATGACAGGAACCTGATTGTCTGGTATTAACGATATAtgatagatgtccttccaagaggaagggggtggtggtgggcatagatagTTATTTAAATGTCCTGTCGGTGGAAGGTGTTTTTTTCAGCCAATGGAACaaaagaggaagaagaggaaaaCTCTTAATGAGAACAGTGGAGATATGCTTGAAGAGCTGGAGCTCAGTGAGCAGGTAGAACTTTTTGAAAAGATTGAACTATGGAGTTAACTTCCAAAGAAAGTTAATATTAAGTTATTATAATTTAAGACTTGATTTCCTTTTCTCGTTTTTTGCAGATTGGAGTAAACTGTATGGAGAAATACAGGAATCACACTTCAGCAATGAGTGAAAACtgcatggatgtatggatggaaggATGTCTTGTCTGTGGTAGGGGTTTCTTTTTCAGGTGATGGACATACAACAGCAAGGAGATGGAGATTCACAACAGGATTGGTGGAGATATGCTTAAAGAGCTGGAGCTCAGTATGCAGGTAGAATTGTTTGAACAGATTGAACAATGGGGTTAACTTCCAAAGAAATTTATTAAGATTAATTAAACACTTGATATATTTTTCTTTGGCAGATTGGCATGCAGAAACAGAGAAACACTCCACAGCAATGACAAGTACATCATTATAAATTAGTCACTACGTTAAATTTGTAAGTTAAATGAAATTAGATAGAAGGATGTTCTTCCAAGAGGGAGTTGGTGATGTAAATAGATTGCTAGATAGGTCTCTTTTCTGTGTCAGTTATTTTATTTGcaggtaat

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0003015 heart process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036919 lncRNA downstream 136 38127897 ~ 38137113 (-) False XLOC_018274
TCONS_00036926 lncRNA downstream 457 38136271 ~ 38136792 (-) True XLOC_018275
TCONS_00036918 lncRNA downstream 1276 38127897 ~ 38135973 (-) False XLOC_018274
TCONS_00036917 lncRNA downstream 1293 38127897 ~ 38135956 (-) False XLOC_018274
TCONS_00036916 lncRNA downstream 1501 38127897 ~ 38135748 (-) False XLOC_018274
TCONS_00036928 lncRNA upstream 104447 38243292 ~ 38244961 (-) True XLOC_018276
TCONS_00036929 lncRNA upstream 219516 38358361 ~ 38373094 (-) True XLOC_018277
TCONS_00035987 lncRNA upstream 365888 38504733 ~ 38508521 (-) True XLOC_018279
TCONS_00036930 lncRNA upstream 383416 38522261 ~ 38525324 (-) False XLOC_018280
TCONS_00035990 lncRNA upstream 383815 38522660 ~ 38525325 (-) False XLOC_018280
TCONS_00035980 mRNA downstream 203994 37920096 ~ 37933255 (-) False XLOC_018273
TCONS_00035982 mRNA downstream 203994 37928399 ~ 37933255 (-) False XLOC_018273
TCONS_00035981 mRNA downstream 204012 37925158 ~ 37933237 (-) False XLOC_018273
TCONS_00035978 mRNA downstream 305310 37831352 ~ 37831939 (-) False XLOC_018272
TCONS_00035985 mRNA upstream 247437 38386282 ~ 38449903 (-) False XLOC_018278
TCONS_00035986 mRNA upstream 248336 38387181 ~ 38446891 (-) True XLOC_018278
TCONS_00035988 mRNA upstream 378596 38517441 ~ 38525467 (-) False XLOC_018280
TCONS_00035992 mRNA upstream 457090 38595935 ~ 38610396 (-) False XLOC_018281
TCONS_00035993 mRNA upstream 457090 38595935 ~ 38617766 (-) False XLOC_018281
TCONS_00035984 other downstream 202934 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035936 other downstream 2592055 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035933 other downstream 2626269 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035911 other downstream 3430677 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035885 other downstream 4185559 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035989 other upstream 379852 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00036007 other upstream 766686 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00036008 other upstream 893976 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036068 other upstream 2623467 40762312 ~ 40766351 (-) False XLOC_018321
TCONS_00036069 other upstream 2623487 40762332 ~ 40766350 (-) False XLOC_018321

Expression Profile

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