RNA id: TCONS_00036927


Basic Information

Item Value
RNA id TCONS_00036927
length 2025
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id XLOC_018274
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 38127897 ~ 38140616 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTGACGTCGGCAGTAAATGTCTGACCATCGTCGACAACGGAGGTATGTTAAGCTcttcttaaatgtttaaatttcgTTTATTATAGGCTGAATGGTTGTTTCAACTTGCTTTTGGTAAAAGACATTATTTCTCTGTAATATAATTTCAGATTGTGATTAGTTTTTGACCGTTTCTtcggctgtggcaacccctgataaaccaggaAAGTGAGTGATATTCGTTTTTAAGGTTTAAATACTATATTTTCTACTATATGTATTACTATGTTGTACTAGATTGTTACACTGTCGACTTGTCAATTCTAGGATTTTGAATGTGATAATATACTGTATTTGATGTCAGATTTAttcctccctgaattattagctcccctgtatatttttttcctcaatttctgtttaaaggcaacatttttgtcacacatttctaaatacaatAGTTGTAATAACTTGTATATAGTAGTAAGTTGTAATAAAAGTTGTAATAAGTAAAAGTACCACATTTCTAatattccctttttttttttgccatgatgacagtacataatattttaataaatattttcaagGTACTAGTacttcatcttaaagtgacatttaaagggttgaCAGCTATAAATAGGCAAGTTAGCTAAACATTAATCAgcaaagtcattgtataacagtggtttgttctgtagacagtcgaaaaaaataatgtgtaagagggctaataatatttaccataaaataatgtaaaaaagtaaaagctgcttttattccagccaaaataaatcaaataaaacttttcttaGAAGAACAAATAtaagaaatattgtaaaaaaatccttgctttgttaaacatcatttgggaaatatttgaaaaagaaaactaaattcaTAGGAGGGCTTCTAATTTTGATTTCAAATGTATTTCCATTATAGTTTGTGTATTGTTATCTTCTTTAGTATTTACAAGTTAAATGTAGAATGGCATTTGTTGTGTTGTAAACacacaaatagataaataaagataACATAAATATAGATTTAACATTTGCAGATTGTTCTGTCGTCAGATAAATTGATTTgttattatgtatttgtttgctgTCAGGTTTACCACTTATTGCATATTACTGTACGTCTATTGTCTGATAGATTGTCTGgatgttgtattatttatttgtaatttatgctGTTGGCCAGATCAACATTGGTagatttttaaattgttattctATTTACAGTTTGACTAATGTTAATGATTGTAACACATTTATCTACGTTTATGTATCGTCCTCTTGTAGAGTAATTTTACCTGCAAAACTGTATTTGTTATTTTTGCAACAGAACTAGTCTGGAGACAGTGATAGATGAAACAAGCATGCATTTGTTGAATAATTTGGTTGACTTTCATTGAATGGTATTAAGAATAATTCTTGACTTGTTATACTTTTCTTGTCTTTTGCAGTGGAGTGGACCGCATGGAGAAAAAcgggaatcacacacctcagcaatgactggaaactgcatggatggatggatggatggatggatgaatggatgtctTGTCTGTGGCAGGGGTTTCTTTTTCAGGCAATGGACATACAACAGGGAGGAGAGTGAGATTCACAAGAGGATAGATGAAAATATGCTTGAGAAGCTGGAGCTCAGAAAGCAGgtacgctgtaaaaaatgcagggttccacacaattcaatcatgttgtcccaacgatcaattaagttaacttaacacttttaacaaatttatctgAATATTTCTTTTTTAAGTGTAGAACTATTTGAACAGATTGAACAATGGAGTTAACTTTCAAAGAAAGTTATTAGTATTAATTAAACacttgatatctttctctttggcagattgGCATGCAGAAACAGAGAAACACACTTCAGCAATGACAAGTACATCATTATAAATGAGTCACTACCTTAAATCTTTAACGTGAATGAAATTAACTTTAAAACAGAGTTTTAATTTTTACAGAGTAAGTGAAGATAGGGTATTTCCTtaagacag

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0003015 heart process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036922 lncRNA downstream 113 38127897 ~ 38138113 (-) False XLOC_018274
TCONS_00036921 lncRNA downstream 316 38127897 ~ 38137910 (-) False XLOC_018274
TCONS_00036920 lncRNA downstream 660 38127897 ~ 38137566 (-) False XLOC_018274
TCONS_00036919 lncRNA downstream 1113 38127897 ~ 38137113 (-) False XLOC_018274
TCONS_00036926 lncRNA downstream 1434 38136271 ~ 38136792 (-) True XLOC_018275
TCONS_00036928 lncRNA upstream 103042 38243292 ~ 38244961 (-) True XLOC_018276
TCONS_00036929 lncRNA upstream 218111 38358361 ~ 38373094 (-) True XLOC_018277
TCONS_00035987 lncRNA upstream 364483 38504733 ~ 38508521 (-) True XLOC_018279
TCONS_00036930 lncRNA upstream 382011 38522261 ~ 38525324 (-) False XLOC_018280
TCONS_00035990 lncRNA upstream 382410 38522660 ~ 38525325 (-) False XLOC_018280
TCONS_00035980 mRNA downstream 204971 37920096 ~ 37933255 (-) False XLOC_018273
TCONS_00035982 mRNA downstream 204971 37928399 ~ 37933255 (-) False XLOC_018273
TCONS_00035981 mRNA downstream 204989 37925158 ~ 37933237 (-) False XLOC_018273
TCONS_00035978 mRNA downstream 306287 37831352 ~ 37831939 (-) False XLOC_018272
TCONS_00035985 mRNA upstream 246032 38386282 ~ 38449903 (-) False XLOC_018278
TCONS_00035986 mRNA upstream 246931 38387181 ~ 38446891 (-) True XLOC_018278
TCONS_00035988 mRNA upstream 377191 38517441 ~ 38525467 (-) False XLOC_018280
TCONS_00035992 mRNA upstream 455685 38595935 ~ 38610396 (-) False XLOC_018281
TCONS_00035993 mRNA upstream 455685 38595935 ~ 38617766 (-) False XLOC_018281
TCONS_00035984 other downstream 203911 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035936 other downstream 2593032 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035933 other downstream 2627246 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035911 other downstream 3431654 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035885 other downstream 4186536 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035989 other upstream 378447 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00036007 other upstream 765281 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00036008 other upstream 892571 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036068 other upstream 2622062 40762312 ~ 40766351 (-) False XLOC_018321
TCONS_00036069 other upstream 2622082 40762332 ~ 40766350 (-) False XLOC_018321

Expression Profile

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