RNA id: TCONS_00003617


Basic Information

Item Value
RNA id TCONS_00003617
length 2460
RNA type mRNA
GC content 0.44
exon number 16
gene id XLOC_001816
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 2715548 ~ 2755378 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCACTCTGACAGCATCTACATTATCGTTAAAACAATCAGGGATGTACATTTCCTCTAGAACGGAGTGCAAATAATAAGCGCCTCACTAAATGCgcaataataattcaatgtacGTTAGGAACTAAGGAGGAACATCAGTAAAAAAGAAATAGTATTTAATGCACATTTCTTGGCTGATTTTTAGCTGCAGGAATGGAGATCGAAACAATGGCAGCGAACTGTGCACTCTTGAAAGCAAGAGATGCAGGTAATGCGTACCGCAAAGGAAGGAGTCGGAAGTGGAAGGAAATTCTGCATTTTCCTCACATAAACCAGTGCAAAGAGCTGGAGAACAGCATTGAGCGAGATTATTACAGCCTGTGTGTGAATCAGCCCATCGGAAAACAGCTCTTCAAGCTTTTCTGTGCTACTGAACCTAAGCTGCAGCATTTAATTGACCTCTTGGAAGAAATGGCGAAATATGAAGTCACGACAGATGACCTGAAAAAAACATCTCGTGATAAACTCATCAATAAATTTAAAACCTCACAGTCCTCTATGGTGCGAGAAATGGTTCACAAAGAAATGCAGAACGGCAACTTGAACATGGAAAATTTCATCAGCAGCTGCCATAGtgCGCTTCATGAGTATCTGAGTGGAGCTCCATTCTCAGAGTATCAGAATAGCATGTACTTTGACAGATTCCTGCAGTGGAAGATGGTGGAGAGACGTCCAGTCACTCAAGACAATTTTCGAGAATACAGAATTTTGGGAAAAGGGGGTTTTGGAGAGgtatGTGCATGTCAGTCCCGAGCATCAGGGAAGATGTACGCATGCAAGAAATTGGTGAAGAAACGGGTTAAAAGGCAAGGAGGGGAAAAAATGGTCCTCAAAGAGAAACAGATTCTGGAACGGGTCAACAGCAGATTTGTGGTGAGTTTAGCCTACACTTATGAGACGAAAGATTCTCTCTGTCTGGTGCTGACGGTGATGGACGGAGGAGACCTGGGCTTTCACATCTATAAAATGGGCAACCAAAAACTGGACAAAAACAGAGTCCAGTTTTACGCCGCTGAGGTCCTGTGCGGCCTGGACCATCTTCATAAACACAACGTCGTTTACAGGGATTTGAAGCCAGAGAACATTCTGCTGGACTATGAAGGTCACATTCGCATATCTGACTTGGGTCTAGCCGAAATCTTGCCAGAAAACAAGCTTGTGAAGGGCAGAGTTGGAACAGCAGGATACATGGCTCCAGAAGTGGTCGCAGGCACGAGCTACGGTGTGAGTGTGGACTGGTGGGGACTCGGGTGTCTGATCTACGAGATGACGGCTAAAAAGCCTCCGTTTCGTAACCACAAGGAACAGATATCGAAAAAGGACCTGGAACAAAGAATCCTGGAGAAGGTGGAGCTGTACGACAAGATGTTTGACGAGGAAACACAAAACATCTGCCAAAAACTCCTGGCTAAAAACCCAAAGGAAAGGCTGGGCTGCAGATCTGGCCAGGGTGCAGAAGTCATCAAGAGTCACCAGTTCTTTAAAAACATCAACTTCACATTACTGGAGGCCGGAATGATGCAGCCTCCCTTCATTCCTGATCCGAGAGCCATTTACTGTGATGACGTGAGCGACATCGATCAGTTCGCTGCGGTTAAAGGAGTCACTCTTGATGAGGCCGATGAAGCTTTCTACGCCGAGTTCAACACGGGCAGCGTTACTGTGCCCTGGCAGACCGAGATGATCGAGACCGAGTGTTTCAAGGACCTGAATGTGTTCGGGCCACACGGGACTAGGTCGCAGGATCTGGACCGCAGTGAACAGATCCAGTCCACTGTCTCCGAGTTTCAGTCCAGCAGTCTGAAAATTCAGTCGCCACTTAGTCGAAGCCGGCTACTGGGCAAAATCTTCAGACGCGCAAAGGACGAGCCAGCAGAACCCATCTTAAGCAAATCCAGCGCGGGTTATGAAAAGCTGTGAGAGAGAACTGCGCTACACCAATCCTGTCCATTTTTAAACTCATATTCTGTTcattttcacctttttttttttttagtcgtcACTGTTTAAACACTATTGGAGCCTTTCAATATCTTATCACAATCCCTGCtgtcttttattattaatattattaatattattacatattagaAAAACAGATGCAAGATGTTTTGTATGCTCAATTTGTAAATAAAAGAAACCCAGTGTGTCTTGTACAGTCATTGCATGAATGAATATTGAATTGTAACAATGTGTTACGGATAAAACGTCCAataagatacaagatgtgcagcacctgaaactacggatactggaagcctgtgctggcatttctcctgcggtgttgcaatcagtgtgtgaagagtgagagaagaggcttgcattgacaatccaacaaaACAGGCAgcacatttaacacattttatgagtggtcagaaacttgtaaataactcatgaaagaataaagttacattaaaccc

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0030177 positive regulation of Wnt signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0016310 phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004703 G protein-coupled receptor kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-274 Predicted to enable protein kinase activity. Acts upstream of or within heart development; positive regulation of Wnt signaling pathway; and regulation of heart contraction. Predicted to be active in cytoplasm. Is expressed in brain; cardiovascular system; and otic vesicle.

Ensembl:

ensembl_id ENSDART00000130793

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005809 lncRNA upstream 211506 2499533 ~ 2504042 (+) True XLOC_001807
TCONS_00005808 lncRNA upstream 277640 2402308 ~ 2437908 (+) True XLOC_001806
TCONS_00005807 lncRNA upstream 310770 2402308 ~ 2404778 (+) False XLOC_001806
TCONS_00003604 lncRNA upstream 724080 1982550 ~ 1991468 (+) False XLOC_001804
TCONS_00005670 lncRNA downstream 222157 2977535 ~ 2979504 (+) True XLOC_001823
TCONS_00005810 lncRNA downstream 507200 3262578 ~ 3269818 (+) True XLOC_001827
TCONS_00005671 lncRNA downstream 544506 3299884 ~ 3312438 (+) True XLOC_001828
TCONS_00005672 lncRNA downstream 581477 3336855 ~ 3341616 (+) True XLOC_001829
TCONS_00005811 lncRNA downstream 1101689 3857067 ~ 3857885 (+) True XLOC_001834
TCONS_00003615 mRNA upstream 24173 2684958 ~ 2691375 (+) True XLOC_001814
TCONS_00003614 mRNA upstream 44253 2669405 ~ 2671295 (+) True XLOC_001813
TCONS_00003613 mRNA upstream 48340 2600830 ~ 2667208 (+) True XLOC_001812
TCONS_00003612 mRNA upstream 119817 2587234 ~ 2595731 (+) True XLOC_001811
TCONS_00003611 mRNA upstream 129923 2582254 ~ 2585625 (+) True XLOC_001810
TCONS_00003619 mRNA downstream 43907 2799285 ~ 2801857 (+) True XLOC_001817
TCONS_00003620 mRNA downstream 51758 2807136 ~ 2836641 (+) False XLOC_001818
TCONS_00003621 mRNA downstream 51798 2807176 ~ 2838190 (+) True XLOC_001818
TCONS_00003622 mRNA downstream 85827 2841205 ~ 2850936 (+) False XLOC_001819
TCONS_00003623 mRNA downstream 85890 2841268 ~ 2850936 (+) False XLOC_001819
TCONS_00003616 other upstream 26867 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003605 other upstream 448191 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003597 other upstream 1050510 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003590 other upstream 1910189 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003583 other upstream 2208292 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003633 other downstream 229666 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003646 other downstream 653405 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003658 other downstream 1737899 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003668 other downstream 2230672 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003675 other downstream 2380464 5135842 ~ 5147582 (+) True XLOC_001854

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000178_00789940_00798419.mRNA True 1670 mRNA 0.47 14 CI01000178 789940 ~ 798419 (+)