RNA id: TCONS_00036926


Basic Information

Item Value
RNA id TCONS_00036926
length 415
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_018275
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 38136271 ~ 38136792 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAACCTCAGCTATGACCCGAACCTGATTGTCTGGTATTAACGATATAtgatagatgtccttccaagaggaagggggtggtggtgggcatagatagTTATTTAAATGTCCTGTCGGTGGAAGGTGTTTTTTTCAGCAAATGTAACaaaagaggaagaagaggaaaaCTCATAATGAGAACAGTGGAGATATGCTTGAAGAGCTGGAGCTCAGTAAGCAGATTGGAGTAAACTGTATGGAGAAATACAGGAATCACACTTCAGCAATGAGTGAAAACtgcatggatgtatggatggaaggatgtcttgtctgtggcaggggtttctttttcaggtaatggacacacaacagcAAGGAGATGGAGATTCACAACAGGATTGGTGGAGATATGCTTGAAGAGCTGGAGCTCAGCAAGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036918 lncRNA downstream 298 38127897 ~ 38135973 (-) False XLOC_018274
TCONS_00036917 lncRNA downstream 315 38127897 ~ 38135956 (-) False XLOC_018274
TCONS_00036916 lncRNA downstream 523 38127897 ~ 38135748 (-) False XLOC_018274
TCONS_00036914 lncRNA downstream 1108 38127897 ~ 38135163 (-) False XLOC_018274
TCONS_00036915 lncRNA downstream 1108 38127897 ~ 38135163 (-) False XLOC_018274
TCONS_00036489 lncRNA upstream 457 38137249 ~ 38138845 (-) False XLOC_018274
TCONS_00036927 lncRNA upstream 1434 38138226 ~ 38140250 (-) True XLOC_018274
TCONS_00036928 lncRNA upstream 106500 38243292 ~ 38244961 (-) True XLOC_018276
TCONS_00036929 lncRNA upstream 221569 38358361 ~ 38373094 (-) True XLOC_018277
TCONS_00035987 lncRNA upstream 367941 38504733 ~ 38508521 (-) True XLOC_018279
TCONS_00035980 mRNA downstream 203016 37920096 ~ 37933255 (-) False XLOC_018273
TCONS_00035982 mRNA downstream 203016 37928399 ~ 37933255 (-) False XLOC_018273
TCONS_00035981 mRNA downstream 203034 37925158 ~ 37933237 (-) False XLOC_018273
TCONS_00035978 mRNA downstream 304332 37831352 ~ 37831939 (-) False XLOC_018272
TCONS_00035985 mRNA upstream 249490 38386282 ~ 38449903 (-) False XLOC_018278
TCONS_00035986 mRNA upstream 250389 38387181 ~ 38446891 (-) True XLOC_018278
TCONS_00035988 mRNA upstream 380649 38517441 ~ 38525467 (-) False XLOC_018280
TCONS_00035992 mRNA upstream 459143 38595935 ~ 38610396 (-) False XLOC_018281
TCONS_00035993 mRNA upstream 459143 38595935 ~ 38617766 (-) False XLOC_018281
TCONS_00035984 other downstream 201956 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035936 other downstream 2591077 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035933 other downstream 2625291 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035911 other downstream 3429699 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00035885 other downstream 4184581 33948642 ~ 33951690 (-) False XLOC_018218
TCONS_00035989 other upstream 381905 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00036007 other upstream 768739 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00036008 other upstream 896029 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036068 other upstream 2625520 40762312 ~ 40766351 (-) False XLOC_018321
TCONS_00036069 other upstream 2625540 40762332 ~ 40766350 (-) False XLOC_018321

Expression Profile

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