RNA id: TCONS_00036931


Basic Information

Item Value
RNA id TCONS_00036931
length 2730
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id XLOC_018282
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 38664764 ~ 38671060 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTTAGTTAGGCACAAGATAGTTTATTAAGCTTTTAATAGACACAAAATGTTTATAAGTGGAATGGCTTGCAGCTCTGGAGGTCAGTTTGAAGCTTTTGAACGGATAAACCATGAGAATCACTCATACAAAACTATTTATTGTACACATTTTTCGAGAGCTAAATAAAGAAACATCTTTTTTTCCCCTTGCAAAATGTAATGAAATCTGACAGTGCTTTATTTAAAATACCACATAACCAAACTATAAAATTACTGTCAAACTATAAATCAACTATAAAATCACTATAAAAGACATGCAGTGTAAAGTATAAGTTTAAATATTCAAATCTTAGACATTATTGAAGAGAAAAAGCAACAGTTTTAGTTAAGCACAAGATATTTTATTGCGCTTTCAATAGAGACACAAAATGTTCATACTGTAAGTGGAATGGCTTGCAGCTCTGGAGGTCAGTTTGAAGCTTGTAAACGGATAAACCATGAgaatcccacacacacacacacacaccatttacTACACATTTTTCGATAGATATACCGAGAAGAAAGGTATTTTAAATGGCAAAAGGTCGTGAAATCTGAATCCTTAACTGAGATTTGACTGTGCCTTATTTAAAATCAGCCATAACCAAACTATAAAATGACtgtacacaaaacaaaaacaggtcagtTAAAATAGAAAAGCACAAACTACAATAAGACATATTACACTAAGAGTCCTGAGACAAAGATGTACATTTCCGAGTTACATTTTGACAAGTGGGACCAAACAGACAAATCAATTTTCTATTAAATAACGTGCAACACTCCTCTCTAGGTGGAAGCTGTGATCAACTTCTATTGTTTGATCATGTAAACTTAAGTGTATCACAGATTGTTTTATGCATATGATTACTGTCACTATCGAAAGCAATGGCTGATTCAATCTCTCTTTTGATTTAAGACCTTCACAAAGTTTCTTGTAATTATTTCTCAAATTTTCTCATAGCTGATCAATGCCACTTAATCAGTCATGACAAGTAAagcagtgaaaaaaataaataaacactatacACTCTTTAAAATTCAAGTATTTAACAGAAAATGGTTGCAATTCAAATTTTAAACCTAGTTTGGGTTCTCTCTGTGGCACTGTAGTGCTAAATGATAAGCAAATAATAATCCTTTGGActaattttttcattaatttcccacattttttatatacaacaaaaaataataataatagaaaagacATTTAACATCCACTTCAGCCTTCAAGACATGAATGaattagaaaaagaaaacaatattgtTCACAATCAGAGCTACAGTAATGCAGTAAAGCAACAATATCTTCAAATTTTACAAAGATTCTATATTgtaacatgtatgcaaattattAGCAATGCTTTAATAAAGGCAGATGAAACTTGAGCTAGAGGTAAATGTTTCCTCATTTCGGATAATTTGCTCAAAAACACACTTCAAATGCACATGTACGCCATACAAGATGACATGAAGTCATCTCACATTCACAAGCAATTATTTATATACCGTGATTTGCACAGTATAAAACTGTATAGTCATACTATAAAACAGTTTCACCATTTCAAGCACACCAATAAAGAAACTAGTGAAATAAGTCCGCTCATTTCccatttcaaatgaaaaatgTTCAAATTGTAGCGTCACTAATGGTCAAATAATATTCAAAATCAGGATCTGTTGATGTTTTGGCCTGCATTGAATGTGTGTAGCAAATCAAACCAGCAGCAAGAGGCGGCTAAGGCTTATGTTTAAATAGAGCAATCAAGAGATTAAGTGCTTAAAAGTTCCCTTCTCCATTGCATGCGGATACAGTCGCTCACGTATAACCTCAGTAGTCCATTCCCTCATCGCTTTCATAGCAGTCTGAAGGAGCATCGGTCCCAAAGTAACGGTCCCCAAAATTACCTGCAACACAGTGGATGTTGATTACGAGGTGCTGAATGCGTAATGTTTTGTTTGTGGGTGATGATAGAGCTCTTCTTACCTATTCCTGGAATGATGTGAAACTCATCGTTGACCTTCTTGTCGACGGCGGTGGTGATGATGCGCACTTTGGGAAAAGCGTAGGCCACTGAATGAACCCCCATCTCCGCCATGAGCAGAGACAGCAGGAAGATTTTGTCCTCCTGGACATCGTGATCCTGGAACAAATTAGTTGGTAAAACAATAGAAACATCTACATATAttgAATTGTGTCAGCAGCAATGACTTACCAGTAAGACTCTGACAGCCATAAGAGCGGCGGCTCCTGTGGAAACGGTGCTGTCCATCAGGATGACATAGTCCTCACTGATGTCCTTGGGCAGACGCAGGTAATGGAGCTGAGGAGAAAAATCACACCATGATAAGACAGGTTTATAGTCCGAGCACAGATTTATGTGCCATTAGGTACAACCCGAAACATGCAAAACAGATGGAGATGTCCAGAAGTTAAACAGCGATTCCGCATTGAGACGTGCTAAATTTAGATTCAAGATGTGCATGCAAGATTTCAGGCCATAGCAAGAATTCATAAAGCTAGAAAAATTATTCTACCCCTGATATCATTTTAGAAGCATTATTTAATAGTTGAAAAACATACATAGTGGCATTTAAAatgactggtgtgtgtgtgtgtgtattatcaCGTCAGACTTTTATTCCTTTTATGTTTAGTCTGAAGTCTCTCTAACTTTGATACTTTTTATATCAAGTCTTTATA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00035990 lncRNA downstream 139439 38522660 ~ 38525325 (-) False XLOC_018280
TCONS_00036930 lncRNA downstream 139440 38522261 ~ 38525324 (-) False XLOC_018280
TCONS_00035991 lncRNA downstream 139446 38524572 ~ 38525318 (-) True XLOC_018280
TCONS_00035987 lncRNA downstream 156243 38504733 ~ 38508521 (-) True XLOC_018279
TCONS_00036929 lncRNA downstream 291670 38358361 ~ 38373094 (-) True XLOC_018277
TCONS_00036002 lncRNA upstream 118868 38789928 ~ 38793543 (-) False XLOC_018285
TCONS_00036004 lncRNA upstream 124897 38795957 ~ 38796584 (-) True XLOC_018285
TCONS_00036019 lncRNA upstream 670360 39341420 ~ 39344130 (-) False XLOC_018294
TCONS_00036020 lncRNA upstream 671600 39342660 ~ 39344123 (-) True XLOC_018294
TCONS_00036932 lncRNA upstream 704823 39375883 ~ 39502876 (-) False XLOC_018296
TCONS_00035993 mRNA downstream 46998 38595935 ~ 38617766 (-) False XLOC_018281
TCONS_00035992 mRNA downstream 54368 38595935 ~ 38610396 (-) False XLOC_018281
TCONS_00035994 mRNA downstream 54404 38596017 ~ 38610360 (-) True XLOC_018281
TCONS_00035988 mRNA downstream 139297 38517441 ~ 38525467 (-) False XLOC_018280
TCONS_00035985 mRNA downstream 214861 38386282 ~ 38449903 (-) False XLOC_018278
TCONS_00035995 mRNA upstream 59231 38730291 ~ 38758797 (-) False XLOC_018283
TCONS_00035996 mRNA upstream 72493 38743553 ~ 38746889 (-) True XLOC_018283
TCONS_00035997 mRNA upstream 92893 38763953 ~ 38787341 (-) False XLOC_018284
TCONS_00035998 mRNA upstream 94528 38765588 ~ 38787047 (-) False XLOC_018284
TCONS_00035999 mRNA upstream 94584 38765644 ~ 38787091 (-) False XLOC_018284
TCONS_00035989 other downstream 142115 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00035984 other downstream 730449 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035936 other downstream 3119570 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035933 other downstream 3153784 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035911 other downstream 3958192 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00036007 other upstream 234471 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00036008 other upstream 361761 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036068 other upstream 2091252 40762312 ~ 40766351 (-) False XLOC_018321
TCONS_00036069 other upstream 2091272 40762332 ~ 40766350 (-) False XLOC_018321
TCONS_00036070 other upstream 2091291 40762351 ~ 40766618 (-) True XLOC_018321

Expression Profile

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