RNA id: TCONS_00036001


Basic Information

Item Value
RNA id TCONS_00036001
length 7486
RNA type mRNA
GC content 0.48
exon number 43
gene id XLOC_018285
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 38788319 ~ 38827623 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGGACAGCATGCTATTTGGCCtagataacaacaacaacatctaaaaGGCGCATTTATTTACTCCGCATCCGGGTGAACATCACCTTGCGCGGCGTGCTTTTCACGTGGGCAAACTTCGGCGATAAGGGAGAAACAGAAGTCATTCAGTTCAACTCGATTATACTTTTTGTTAACGCTAGATATTCGCTTAGTGTTTAGAAATACGAACAGTTTAGTCATGTCGCTGAAAATGGCATCTTTAGTGCTGGAGGACGGGACGACATTTAAAGGCCGTCTGTTCGGTGCCGTATCTTCAGTGTCTGGTGAAGTTGTTTTCCAGACAGGAATGGTGGGTTATCCGGAGGCACTCACAGATCCGTCTTACAAGTCCCAAATACTAACTCTGACGTACCCGATGATTGGCAATTATGGTATTCCAAAAGATGAAGATGGAGAGTTTGGACTCAGCaagTGGTTTGAATCTTCCCAAATCCATGCTGCTGCTCTCATTGTTGGGGAGGTTTCGGAGAATCCCAGTCACTGGAGCGCCGCCAAATCTCTGGATGAGTGGCTCAGAGAGCAAGGCATCCCTGGCCTCCAAGGTGTTGACACTCGATGCTTGACCAAAAAGATCAGAGAGAAGGGAACCATGTTGGGAAAACTTGTGGTGGAAGGAACTCCAGCCGACAATATTCCGTTTGACAATCCAGATGCCCGAAACCTTGTTAAAGAAGTTTCCATGAAAGCACCAAAAGTGTTTAATCCAGAGGGCACAGTGAGAATCACTGCTATAGACTGTGGCATCAAGTACAACCAGATACGTTGCTTGTGCCAGAGAGGCGCCCGGGTCACTGTTGTCCCCTGGGATCAACCTCTGGACAGCAATGACTTTGATGGGTTGTTTATCAGCAACGGTCCTGGCAATCCTGAGTACTGTAAGGAGACTGTAGAGAATATACGCAAAGTGGCATGTGTGGAGAATCCCAAACCTATCTTTGGAATTTGCTTGGGCCATCAGCTGCTGTCTTTGGTCATTGGCGCAAAGACATACAAAATGAAGTACGGTAATCGTGGCCATAATCAGCCATGCATCCATAAAGGAACCAGTCGCTGTTACATCACCTCTCAGAATCACGGGTTTGCTGTGGATCCAGAAACTCTTCCAAAGGACTGGGATGTGCTCTTCACCAATGCTAATGACCAAACCAGCGAGGGCATCGTTCATAATCACAAACCACTCTTCAGTGTCCAGTTCCATCCTGAACACATGGCAGGTCCCACAGACCTTGTTGGTCTCTTTGATGTGTTTCTGGATACAGTCAGAGATGTAAAGGAGAACAAGGCTGGAAAATCAGTGAAGCAAAGATTAATGGAGCACCTCACCTTTCCTGGATCTCCTGACCCAAATGCCTTTGTTCGACCACGTAAAGTTCTGGTTCTGGGTTCAGGTGGTCTTTCCATTGGACAGGCTGGAGAGTTTGACTATTCTGGATCTCAGGCTATAAAAGCTATGAAAGAAGAGAATATCCAAACCATTCTCATCAACCCAAACATTGCCACAGTACAAACCTCAAAGGGCCTGGCAGACAAAGTCTACTTCCTTCCGATCACACCAGAGTACGTCACACAGGTGATAAAGAACGAGCGTCCAGATGGGGTGTTGCTCACTTTCGGAGGTCAGACAGCCCTGAACTGTGGTGTGGAACTCAAAAAACAAGGAGTGCTGGAAAAATACAAAGTGCGTGTGCTTGGTACCCCAGTGGCCTCCATAGAGATGACAGAAGACAGGAAGATCTTTGTGGAGAAGATGGAGGAAATCAACGAGCATGTCGCCCCCAGTGAGGCGGCCATGTCTGTTGAACAGGCAGTGGCTGCAGCTGAAAGACTTGGTTATCCGGTTCTGGTCCGTTCTGCGTTTGCCTTGGGTGGACTGGGTTCAGGCTTTGCCAATAACAGAGATGAGATGATCACGTTGGTCACTCAGGCCTTTGCCCACACATCACAAGTCCTGGTTGACAAATCGCTTAAAGGCTGGAAGGAAATTGAGTATGAAGTAGTGCGGGATGCCTATGACAATTGTGTTACGgtGTGTAACATGGAGAACATCGATCCTCTaggaattcacactggagagtcCATAGTGGTAGCTCCTAGTCAGACACTAAACGACTATGAATACAACATGCTGAGAAACACAGCCATCAAAGTTATTCGCCACTTGGGTGTTGTGGGAGAGTGCAACATTCAGTATGCCCTGAATCCTGAATCAGAGCAGtacTACATCATTGAAGTCAATGCCCGTCTCTCTCGAAGCTCTGCATTGGCCAGTAAGGCCACAGGTTACCCGCTGGCCTACGTGGCTGCTAAACTCAGCTTGGGAATCCCTCTGCCCGTGCTCAAAAATTCAGTGACTAATTCCACAACCGCCAACTTTGAGCCCAGTCTGGATTACTGCGTGGTGAAGGTTCCTCGCTGGGATTTAAGCAAGTTCCTCAGAGTCAGCACTAAAATAGGCAGCTCCATGAAGAGTGTTGGAGAAGTGATGGCCATCGGCCGCAGCTTTGAAGAGGCCTTCCAGAAAGCTTTGAGAATGGTAGATGAGAACTGCGTTGGATTCGATCACACCATCAAGCCAGAGTCGGAAGAGGAGTTGCAGACTCCCACAGACAAGCGCATCTTTGTTCTGGCAGCTGCTCTGCATGCTGGATATACAGTAGAGCGGCTCTATGAGCTGACCAAGATAGACCACTGGTTTCTGCATAAGATGAAGAACATCGCAGACCACAAGAAGCTTCTGGAGACGTATAAGCAGGATGAGAGTGCAATGCCTCCAGAAATCATGAGGAAAGCCAAGCAACTGGGCTTCTCTGACAAACAGATCGCTCAAGCTGTGCAAAGCACTGAACTGGCTGTGAGGAAGTTGAGACGGGACTGGAAGATCTTTCCAGTGGTCAAACAGATCGACACTGTGGCTGCAGAGTGGCCCGCTCAAACCAACTACCTGTACCTGACATATCACGGCTCAGAAAGTGACGTAGTGTTCGAGCAACCACATGTCATGGTGATTGGCTCCGGGGTTTACCGCATTGGCAGCAGTGTGGAGTTTGACTGGTGTGCTGTTGGGTGTATTATGGAACTCAGAAAGATGGGATATAAAACCATTATGGTGAACTACAACCCGGAAACAGTCAGCACTGATTATGATATGTGTGATAGACTGTATTTTGATGAGATCTCCTTTgagGTGGTGATGGATATCTATGAGATGGAGAATCCAGAGGGTGTTATTCTGTCTATGGGTGGGCAGCTGCCCAATAACATCGCCATGTCCCTTCACAGACAGCAGTGCAGGATCCTGGGCACCTCACCTGAGTTCATAGACAATGCGGAAAACCGCTTCAAATTCTCCAGAATGCTGGACACCATCGGGATCAGCCAGCCTCGGTGGAAAGAGCTCTCTGATACTGAGTCTGCTGTGAATTTCTGTGAGACGGTGGGTTATCCCTGCTTGGTGAGGCCATCATATGTTCTGAGCGGAGCTGCGATGAACGTGGCCTACTCAGACACGGATATGGAGAAGTTTCTGAGCAGTGCTGTTGCTGTGTCGAAGGAACACCCTGTCGTTATTTCCAAATTCATTCAGGAGGCCAAGGAGATTGATGTGGACGCCGTGGCCTGTGATGGAGAGGTTATTGCCATCGCGGTTTCTGAGCATGTGGAGAACGCAGGGGTTCATTCTGGAGACGCCACACTGGTGACTCCTCCACAGGACATTAACCAGAAAACCATGGAGCGCATTAAGATGATCGTTCATGCTATTGGGCAGGAGCTTCAGGTCACTGGCCCGTTCAACCTGCAGCTCATTGCCAAGGATGATCAGCTGAAGGTGATCGAGTGCAATGTGCGAGTCTCGCGCTCCTTCCCTTATGTGTCCAAAACACTTGGTGTGGATCTTGTCGCGCTTGCAACAAGAGTCATCTTGGGAGAGGAAGTGGAAGCTGTTGGGCTGATGAGGGGGAATGGCATTGTTGGAGTTAAGGTTCCTCAGTTCTCCTTCTCCCGCCTGGCTGGAGCAGATGTGGTTTTGGGTGTTGAGATGACCAGCACTGGAGAAGTGGCCTGCTTCGGGGAGAACCGATATGAGGCCTATCTCAAAGCCATGCTTAGCACCGGCTTCAAGATCCCTAAAAAGAACATTCTGCTCTCTATTGGTAGTTACAAGAATAAGAGTGAGCTGCTGCCCACAGTACAGACTTTGGAGAGTTTGGGTTATAACTTGTATGCAAGTCTTGGCACTGCTGACTTCTACACTGAACATGGAGTCAAGGTAATGGCAGTGGACTGGCCATTTGAAGAGGAGAGTGACTGTCCAAATAAGGACAAACAGCGCAACATCATGGACTATCTGGAGGAGAACCATTTTGACTTGGTCATCAATCTGTCTATGAGGAACTCTGGAGGAAGACGCTTGTCCTCTTTTGTGACCAAAGGATACCGAACTCGTCGAATGGCTATTGACTTCTCAGTGCCACTCATAACTGACATAAAGTGCACTAAGCTCTTTGTTCAAGCACTGAAGCAAATTGGACAGGCTCCTCGCGTGAAGACACATGTAGACAGCATGACCTCACAGAAACTCATCCGTTTGCCAGGTTTGATTGATGTCCATGTACATCTGCGAGAGCCTGGTGCCACCCATAAAGAAGACTTCTCGTCGGGCACTGCTGCTGCACTCGCTGGAGGTATCACTATGGTGTGTGCAATGCCCAACACTAACCCTGCCATCATCGACCCCAACTCCTTTACTATGGCACAAAAGCTTGCAAAGGCTGGGTGCCGCTGTGATTATGCACTTTTCGTGGGGGCTTCATCCGACAACGCTGCTCTACTTCCGTCCATTGCAAGCTCTACAGCTGGTCTGAAGATGTACTTGAATGACACCTACTCTACTTTGAAGATGGACAATGTCTCGCTGTGGATGGAGCACTTCGAAAAGTGGCCGAAGCACTTGCCCATTGTGGCACATGCAGAGAAACAGACAGTGGCTGCAATCCTGCTGGTGGCACAGCTCTATCAGAGACCTGTTCATATCTGCCACGTTGCCAAGAAAGAAGAGATTCTGATCATTCGAGCTGCTAAACAAAAAGGGATCCAGGTGACGTGTGAAGTGGCACCTCACCATCTTTTCTTGTGTGAAGATAACGTGCCCGTCATTGGAAAAGACAAGGCACAAGTGCGCCCCATGCTGGGCACACGCGAGGACATGGAGGCATTATGGGAAAATCTAGACATCATTGACTGTTTTGCAACAGACCACGCTCCACATTCAGCGGAAGAGAAGATCTCAGAGAAGCCTCCTCCAGGTTACCCAGGTCTGGAGACGATGCTGCCTCTGCTGTTCACGGCCGTCAGCGAGGGTCGCCTTACAGTCGATGACATTATCAAGAGGCTGTATGAAAACCCCCGAAAAATCTTCTCCCTTCCTGCTCAAGAAGACACCTATGTTGAGGTGGATTTGGAGCAGGAGTGGATCATTCCAAAGCACATGCAATTCACCAAGTCAAAGTGGACACCTTTTGAGGGcatgaaagtgaagggaaaagTCATGAGGGTTGTGCTCAGAGGCGAAGTGGCTTATATTGATGGACAGGTGTTGGTACCTCCTGGTTATGGTCAGGATGTAAAGTCTTGGTCAGCAACCCCAACAGCAACCACTGAGGTGATAATGGATGCTCCTAAGCGTGTGATCGAGGCAATGACTCCTGAGCGCCCCCGTCAGGCGGCACCTGTTGATGTGGTCCGCAGTCGTGCCCCGAGCCCACGCCGCTCAGCTGGAGATGGACGGTTCATTCTGCCACCTCGTATCCACCGGTCATCTGATCCCGGCCTGCCTCCAGAATTGGCTCTACCAGCAGAGGCATACGCTCACCCTCCTCCCCTGGCCAGGATCCTGTCACCTCAAGCTGGGCAACCGCAGATCCTGCCTCACCCTCAAACCTCCCCGCTGCTGCACCCGCTGGTGGGCCAGCACATCCTGTCTGTGCGCCAGTTCAGCAAGGAACAGATGTCACATCTGTTCAATGTGGCACATACTCTTCGTCTCATGGTGCAGAAGGAACGACCGTTGGATATTTTGAAGGGTAAAGTCATGGCCTCTATGTTTTACGAGGTGAGCACTCGCACCAGCAGTTCATTCGCAGCAGCCATGCATCGTCTGGGAGGGTCTGTGGTGCATTTCTGCGAGTCCACATCTTCAACGCAGAAGGGCGAGTCTCTGGTGGACTCTGTGAACACCATGAGCTGCTATGCTGATGTCATTGTTCTGCGGCACCCCATACCAGGAGCTGTAGAGAGTGCGGCAAGACATTGTCGGCGTCCGGTGATCAATGCTGGTGATGGGGTCGGAGAACATCCAACTCAGGCCCTTCTGGACATCTTTACAATCCGAGAAGAGCTGGGAACGGTCAATGGCATGACTATTACCATGGTAGGCGACCTGAAACATGGGCGAACTGTGCATTCTCTAGCTAGACTTCTCACTCAGTACAGAATCACTTTACGCTATGTGGCTCCAAAGAATCTGAGCATGCCTGCAGAAATCATCGACTTTGTGGCCTCCAAGGGAATTAAACAGGAGGAGTTTAATAGCATTGAAGAAGCCCTTCCTGACACTGACGTTCTGTACATGACGAGAATACAGAAAGAGCGGTTCTCTTCTGAAAAAGAGTACAATGCGTGTTTTGGCCAGTTCATCCTAACCCCACATATCATGACGGGAGCCAAAAGAAAGATGGTGGTCATGCATCCTCTTCCCAGAGTCAACGAGATCAGtgtggAAGTGGACACAGATCCTCGGGCTGCTTACTTCCGGCAGGCAGAGAACGGGATGTATATTCGGATGGCACTACTGGCTACTGTATTGGGGCGATGAAGGGACCATAATGGTTCAGTCTTGACATTTGgcagtaaagggaaatattttatTGCTTACTGATGTGATTCCGTGTTTATTGTTCACTCTATATTGCTGCATTAAGTGAGATTTGTGGGTTGAAGTACCCAGAATTGTCTTTCATTCCGGTATTGACCACAATAACATTCCATATTGAGTATTTTACCTAAAACACGCACATTAAATCAACCACAGTGGAGTGTGGtttgacattttttgtttgtttgtttttttcatttattgtagTGCTCTAGCATGTGTAGAGAATTGCTCAAGTGTCATTTCAGTGTCTTTAAACTTGCAAACAGTTCTACAACTACATATTTTACTGTTATAAATGCAAAtactttattcttttcttgtCCATTTACAACAATGCAGATGTATTTTCATGTCACCATATTCATTTTTTCCTATCCAATTGGGACCAGACTTTAGTAACCCAATCCTCTCAGATAAATAGATAGTGTGGTAGGAGGATTATTCTTCTATACTGAGTAAAGGTTTTGTAGTTGAAATTTTTAGACAATAAAAATGGCAATCTTTGATCTTTC

Function

GO:

id name namespace
GO:0030947 regulation of vascular endothelial growth factor receptor signaling pathway biological_process
GO:0019240 citrulline biosynthetic process biological_process
GO:1900746 regulation of vascular endothelial growth factor signaling pathway biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0021610 facial nerve morphogenesis biological_process
GO:0021615 glossopharyngeal nerve morphogenesis biological_process
GO:0021636 trigeminal nerve morphogenesis biological_process
GO:0021644 vagus nerve morphogenesis biological_process
GO:0006207 'de novo' pyrimidine nucleobase biosynthetic process biological_process
GO:0008593 regulation of Notch signaling pathway biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0006228 UTP biosynthetic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0006541 glutamine metabolic process biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016743 carboxyl- or carbamoyltransferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016597 amino acid binding molecular_function
GO:0004070 aspartate carbamoyltransferase activity molecular_function
GO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity molecular_function
GO:0004151 dihydroorotase activity molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko00250 Alanine, aspartate and glutamate metabolism
ko00940 Phenylpropanoid biosynthesis
ko02024 Quorum sensing
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-021030-4 Predicted to enable aspartate carbamoyltransferase activity and dihydroorotase activity. Acts upstream of or within several processes, including 'de novo' pyrimidine nucleobase biosynthetic process; cranial nerve morphogenesis; and regulation of signal transduction. Predicted to be active in cytosol. Is expressed in several structures, including digestive system; immature eye; nervous system; neural tube; and pectoral fin. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 50. Orthologous to human CAD (carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase).

Ensembl:

ensembl_id ENSDART00000153310

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036931 lncRNA downstream 117259 38664764 ~ 38671060 (-) True XLOC_018282
TCONS_00035990 lncRNA downstream 262994 38522660 ~ 38525325 (-) False XLOC_018280
TCONS_00036930 lncRNA downstream 262995 38522261 ~ 38525324 (-) False XLOC_018280
TCONS_00035991 lncRNA downstream 263001 38524572 ~ 38525318 (-) True XLOC_018280
TCONS_00035987 lncRNA downstream 279798 38504733 ~ 38508521 (-) True XLOC_018279
TCONS_00036019 lncRNA upstream 513797 39341420 ~ 39344130 (-) False XLOC_018294
TCONS_00036020 lncRNA upstream 515037 39342660 ~ 39344123 (-) True XLOC_018294
TCONS_00036932 lncRNA upstream 548260 39375883 ~ 39502876 (-) False XLOC_018296
TCONS_00036490 lncRNA upstream 550078 39377701 ~ 39461357 (-) False XLOC_018296
TCONS_00036933 lncRNA upstream 555529 39383152 ~ 39432084 (-) False XLOC_018296
TCONS_00035997 mRNA downstream 978 38763953 ~ 38787341 (-) False XLOC_018284
TCONS_00035999 mRNA downstream 1228 38765644 ~ 38787091 (-) False XLOC_018284
TCONS_00035998 mRNA downstream 1272 38765588 ~ 38787047 (-) False XLOC_018284
TCONS_00036000 mRNA downstream 9840 38765808 ~ 38778479 (-) True XLOC_018284
TCONS_00035995 mRNA downstream 29522 38730291 ~ 38758797 (-) False XLOC_018283
TCONS_00036005 mRNA upstream 3965 38831588 ~ 38836161 (-) True XLOC_018286
TCONS_00036006 mRNA upstream 64612 38892235 ~ 38917372 (-) True XLOC_018287
TCONS_00036009 mRNA upstream 227809 39055432 ~ 39103119 (-) False XLOC_018290
TCONS_00036010 mRNA upstream 228437 39056060 ~ 39188476 (-) True XLOC_018290
TCONS_00036011 mRNA upstream 363231 39190854 ~ 39219537 (-) True XLOC_018291
TCONS_00035989 other downstream 265670 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00035984 other downstream 854004 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035936 other downstream 3243125 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035933 other downstream 3277339 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035911 other downstream 4081747 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00036007 other upstream 77908 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00036008 other upstream 205198 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036068 other upstream 1934689 40762312 ~ 40766351 (-) False XLOC_018321
TCONS_00036069 other upstream 1934709 40762332 ~ 40766350 (-) False XLOC_018321
TCONS_00036070 other upstream 1934728 40762351 ~ 40766618 (-) True XLOC_018321

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_01788875_01811689.mRNA True 6904 mRNA 0.50 44 CI01000029 1788789 ~ 1811689 (-)
bowfin (Amia calva) AMCG00004172 True 6772 mRNA 0.54 42 CM030121.1 36312921 ~ 36339478 (-)