RNA id: TCONS_00036005


Basic Information

Item Value
RNA id TCONS_00036005
length 1164
RNA type mRNA
GC content 0.43
exon number 6
gene id XLOC_018286
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 38831588 ~ 38836161 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTGAGATCAAGATTTACTGAACTGCATAAAAAATAATCACCAGCAATGTGAAATTAGATTTCTCTTCCAAAAAGACTACAGACATCGTCATTATGGGCTTTGAGAAAATACTGCACCACCTCTGGTTCATAAAAGACATTTTTGAGCTAATTCTTGGTGCTGTCTTTTACTTTTTTGAAGCCTTCGTTCGATTCTTTATTCCACGTAGCAAGAAAGATGTTGAGGGAGAGATTGTTTTGGTTACCGGGGCTGCAAATGGGATTGGAAAACTGATTGCCAAAGAACTTGGACACTATGGAGCAACATTAGTTCTGTGGGATATAAACTCGGAGGCACTGGAGAAGACAGCCAAGGAGTTGAAGCAAGTACTAGATGTGCGTGTTTATGCCTACACCTGTGACTGCAGCCGAAGGAGTGAGGTCTACAGAGTTGCTGAAGTGGTCAAAAGGGAGGTTGGAGATGTGTCAATCTTGGTCAATAACGCTGGAATGGTATCAGGAAAATACACTTTTCTTGAAGCCCCTGACAGTCTGGTGGACCGGACACTACGGGTCAATGCTGCTGCTCATTtctggACTTACAAGGCATTTCTCCCAGCAATGTTGGAACAAGACCACGGGCACCTGTTGTGTGTGGCATGCCATGGAGCCTTGTTTGCAATGAATGGCCTTGCAGACTATTGTGCAAGCAAGTCTGCAGCAGTGAGATTTGCAGAATCTATTGCACTGGAGCTGCTTGTACTTAAAAAGGAAGGGATCAAAACAACAATAGTGTGTccttatttaattaatacaaacATGTTTGGCGGATGTCAAACTAAGAGACCGTTCTTTCTTCCTGTCTTGGAGCAGAGATATGCAGCAAAACAGATTGTGGATGCCATACTGCAGGAGAAGATGTACTTGTTGTTGCCATCAAGTCTGTCTCTTTTGATGGCACTTAAGAGTGTCATGCCTGCCAAACTGGGGATCATCTTTGTGAACTTCTTTGGTGGCATGGATCTAATGGACCATTTCAGAGGAGTCCCTACCCATAATCAGCTACAGAAAACCTCAACGGCAAAGAAACCCCTCTTGTCTATTACAACTAGCAAGAAGTTGCAAAACATCAATCAAAACGAATCAGCAGTGAGTTCATTTCATTAAAAGTTGTACAGAATGTT

Function

GO:

id name namespace
GO:0005811 lipid droplet cellular_component
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-340 Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to be active in lipid droplet. Orthologous to human SDR16C5 (short chain dehydrogenase/reductase family 16C member 5).

Ensembl:

ensembl_id ENSDART00000061358

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036004 lncRNA downstream 35004 38795957 ~ 38796584 (-) True XLOC_018285
TCONS_00036002 lncRNA downstream 38045 38789928 ~ 38793543 (-) False XLOC_018285
TCONS_00036931 lncRNA downstream 160528 38664764 ~ 38671060 (-) True XLOC_018282
TCONS_00035990 lncRNA downstream 306263 38522660 ~ 38525325 (-) False XLOC_018280
TCONS_00036930 lncRNA downstream 306264 38522261 ~ 38525324 (-) False XLOC_018280
TCONS_00036019 lncRNA upstream 505259 39341420 ~ 39344130 (-) False XLOC_018294
TCONS_00036020 lncRNA upstream 506499 39342660 ~ 39344123 (-) True XLOC_018294
TCONS_00036932 lncRNA upstream 539722 39375883 ~ 39502876 (-) False XLOC_018296
TCONS_00036490 lncRNA upstream 541540 39377701 ~ 39461357 (-) False XLOC_018296
TCONS_00036933 lncRNA upstream 546991 39383152 ~ 39432084 (-) False XLOC_018296
TCONS_00036001 mRNA downstream 3965 38788319 ~ 38827623 (-) False XLOC_018285
TCONS_00036003 mRNA downstream 29607 38791699 ~ 38801981 (-) False XLOC_018285
TCONS_00035997 mRNA downstream 44247 38763953 ~ 38787341 (-) False XLOC_018284
TCONS_00035999 mRNA downstream 44497 38765644 ~ 38787091 (-) False XLOC_018284
TCONS_00035998 mRNA downstream 44541 38765588 ~ 38787047 (-) False XLOC_018284
TCONS_00036006 mRNA upstream 56074 38892235 ~ 38917372 (-) True XLOC_018287
TCONS_00036009 mRNA upstream 219271 39055432 ~ 39103119 (-) False XLOC_018290
TCONS_00036010 mRNA upstream 219899 39056060 ~ 39188476 (-) True XLOC_018290
TCONS_00036011 mRNA upstream 354693 39190854 ~ 39219537 (-) True XLOC_018291
TCONS_00036012 mRNA upstream 424314 39260475 ~ 39265453 (-) False XLOC_018292
TCONS_00035989 other downstream 308939 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00035984 other downstream 897273 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035936 other downstream 3286394 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00035933 other downstream 3320608 35510865 ~ 35510980 (-) True XLOC_018244
TCONS_00035911 other downstream 4125016 34703077 ~ 34706572 (-) True XLOC_018233
TCONS_00036007 other upstream 69370 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00036008 other upstream 196660 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036068 other upstream 1926151 40762312 ~ 40766351 (-) False XLOC_018321
TCONS_00036069 other upstream 1926171 40762332 ~ 40766350 (-) False XLOC_018321
TCONS_00036070 other upstream 1926190 40762351 ~ 40766618 (-) True XLOC_018321

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_01812895_01814632.mRNA True 963 mRNA 0.43 5 CI01000029 1812805 ~ 1814632 (-)