RNA id: TCONS_00003620


Basic Information

Item Value
RNA id TCONS_00003620
length 3383
RNA type mRNA
GC content 0.51
exon number 20
gene id XLOC_001818
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 2807136 ~ 2838190 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTCAGAGGAATTCCTTTCCACTACAACAGCGGAAAACAGCCACAATCCCCCTTACATCTGACCTCCACACCAGCTTCATTTATTCCATCTCCAGCGCAGACCAAGAGTCTGCAAACATTCAGATCAACGACTTTTCATAGACCAGAGTGCTAGCTGACCGGTTTATGCACACACTTACCATCTCTGAACAGTAGCACTGGTGCAGAAGATCCCAGAAGACCATGAGGGTTTTAGTATGTGCAGCGTTATTTGCTCTATGCTGGATTTTGACATTTGCTATCAATGAAGAGTTGGCTAATGCTCCCAACCAGAGAACCAGAAGCATCCAAATGAGACAAAGCAATGGAGTTAAATCCAACAGAGATGATCTGCAGGAAGGGTTTTCAGAGGACACTCAGATGGACGAGCCTGGAGAAGAAATGGCTGAAAAGGAAAAACCAAAGGGTAAAAAGACACCAGAGGAGATCTTAGCTGCCAAGGCTAAGAAGGCGGCAGAGAAGGAAGCCAAAGCCAAGAAACCGAAGCCCACAAAAAAACCCAAACCAACAAAGAAACCAAAACCTCCAAAGGCCACCAAGAAGTCAAAGCCTCCAAAAGCCACCAAAAAGCCGAAAGCAGCGAAGCCAACAACACCAGCTAGAGAAACTAAACCGACCAAAAAGCCAACaatggaggaagaggaggagaaacTGCTGCTGGAGTTGGGATGGGACACATTGTCACCAAAGGAGACAGAAATGGAGAAACCCATTGGCCCAGATCATGACATGCACAGCAAGAAAGACCCCACAACACCTCCATCAGTCAAAGAGCATATGCCGGATAACTGGGACAGCCGACatgaaatccaagagcctGACCTCATTCCTAAAGTCAAGCAGCCGTCCTCCACCGATGACCCGAGTATATACTTACCAATCCCAGAGGAAGCCACTACCACCCCTCGAACAATCGCCCCTTGGTACGAGGAATATGATTATGCCGACTTGGCGGCAAAAAAGCAGGAGGAAGAGCTGGAAAAAGCAAGAAAGGCCAAAGAGGAGAAGGCAGAAAAACTGCGGAAGATGtgggaagaggaggaggaggaaaagaggAAGCAGACGGCTCTTCATGCCGAGCCAAAGAAGTGTCCTCCTCTTGGACTGGAGTCCCATCGAGTGGAGGATGATCAGATTCTGGCGTCTTCTTCATCTAATCTTGGTTATTCAGCTCTGAGAGGACGGCTCAACATGCAGAATTCGGCTGATGAGGAGGATGTTTACGGTGGAGCGTGGTGCGCTGATACGGAGGAGAAGGAGCACTGGTTTCAGGTGGACGGCCGACGAGAGGTGGAGTTTACCGGTGTAATCACACAGGGCAGAAACTCAGAGTCAAACAATGACTTTGTGTCCTCATTTTTCGTGGCCTTCAGTAACGACAGTCGTGAATGGACGGTTCTTCATGATGGTTATGCTGAGTGGCTCTTTTATGGGAATGTGGATAAAGACACTCCAGTAATGACGGAGTTCTCGTATCCGGTGGTTGCGCGGTACATCCGTGTGCTGCCGCAGAGCTGGAACGGGAGTCTGTGCATGAGGCTGGAGGTACTCGGCTGCCAGTTACCCACTAGTTATGCAACTGAGAATGACGTTCCACCAACAGATGATCTGGATTACAGGCATCACAACTATAAAGAGATGAGACAGATGATGAAGGTGATCAATGAGGAATGCCCTAATATCACCAGAATTTATAACATCGGGAAAAGCTTTCAAGGGCTGAAGATGTACGCCATGGAGATCTCAGACAACCCTGGAGAACACGAGCCAGGTGAACCAGAATTCAGGTACACGGCAGGGCTTCATGGGAACGAGGTGCTGGGCCGGGAGCTTCTGCTGCTCCTCATGCAGTTCATCTGCAAAGAATACAATGACGACAACCCGAGAGTGCACCGCCTGGTGGAAACGGTGCGAATTCATCTGGTGCCATCGCTAAACCCTGACGCCTATGAGCTGGCATACGAGATGGGATCTGAGATGGGAAACTGGGCTTTGGGACACTGGACAGAGGAGGGGTACGACATTTTCCAGAATTTCCCAGACCTGAACAGTGTTCTGTGGGGTGCGGAGGACAGAGGATGGGTGCCGCGGATCGTTCCCAATCACCACATTCCCATCCCTGAGAACTTTCTCAATGGCTCTGTGGCGACTGAAACTAAAGCCATCATCAGCTGGATGGAGAGGACGCCGTTTGTTTTAGGCGCGAATCTGCAGGGCGGAGAGAAGCTGGTGGCGTACCCATTCGACATGCAACGTCCACCGCGGGCCACGAGCACGGACGGACGGGTCGGTCAGCCGGTGCAGGAGTACCACAACATGAACGAGGAGACCTGGGCTCGGATTCAGCGGCAGAACGAAGGCGCTCTCCGCGAAACAGCGGATGAAAACCTGTTCCGGTGGCTCGCCACGACGTATGCACACAGTCACCTCACCTTGACGGAAAACCACCGCGGGTCCTGCCATACCGATGACATCACCGGCGGACAGGGCATCATCAACCGCGCCAGCTGGAAACCAGTTGTGGGCAGCATGAACGACTTCAGCTACCTGCACACCAACTGCTTCGAGATTTCCATCTTTCTTGGGTGCGATAAGTTTCCCCATGAGAGTGAATTGCCGTCGGAGTGGGAAAACAACCGTGAGGCGCTGCTGGCTTTCATCGAGCAGGTGCATCGAGGCATTAAAGGGGTTGTGAGAGACGTCGATGGGAATCTTCTGGCAAATGCCACAGTGTCAGTGGAGGGAATCAAACATGACGTCAAAACAGCTTCCACTGGTGATTACTGGCGTCTCCTCAACCCAGGCGAGTATCGCGTAACAGCGCGAGCGGATGGTTACTCCTCTCAGACGCGTCTTTGCATTGTCGGCTATGATGCCAACGCAACACCCTGCAGTTTCACCTTGACCAAATCTAACTGGGCTCGTATCCAGCAAATCTTGGCTCAAAGCGGAAAGAGACCAAGACTGGTTAACAACATCCCTCGAAACGCCAACAACCAAGTCAATGGTGGAAGCACAGGGCCCGCCGGTGGCTCCCAAAACGAACGTTTGAACCGCATACGACTGATGCGCATGAGGAAACTGCGGATGGAGAGGATGAAAAGCAGCACAACTACAGAAATGACCACCTCAACAACCACAACCACACCTGaacccacaacaacaacaacactgggGTCAACAAGTGAATCTTGGTATGACTGGTTTGAACAGGAGAGCTTTAACTTTGAGCACACAATAGATGAAGATTAGAGAAGAATCACCAgacgtttacatacactgtataaaaagccacataaccatttaaaaaagaaaagagatgttaatgtgactcaacgttttct

Function

GO:

id name namespace
GO:0016485 protein processing biological_process
GO:0006508 proteolysis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0005615 extracellular space cellular_component
GO:0004181 metallocarboxypeptidase activity molecular_function
GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2390 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within proteolysis. Predicted to be located in extracellular region. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome classic-like 2. Orthologous to human AEBP1 (AE binding protein 1).

Ensembl:

ensembl_id ENSDART00000126440

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005809 lncRNA upstream 303094 2499533 ~ 2504042 (+) True XLOC_001807
TCONS_00005808 lncRNA upstream 369228 2402308 ~ 2437908 (+) True XLOC_001806
TCONS_00005807 lncRNA upstream 402358 2402308 ~ 2404778 (+) False XLOC_001806
TCONS_00003604 lncRNA upstream 815668 1982550 ~ 1991468 (+) False XLOC_001804
TCONS_00005670 lncRNA downstream 140894 2977535 ~ 2979504 (+) True XLOC_001823
TCONS_00005810 lncRNA downstream 425937 3262578 ~ 3269818 (+) True XLOC_001827
TCONS_00005671 lncRNA downstream 463243 3299884 ~ 3312438 (+) True XLOC_001828
TCONS_00005672 lncRNA downstream 500214 3336855 ~ 3341616 (+) True XLOC_001829
TCONS_00005811 lncRNA downstream 1020426 3857067 ~ 3857885 (+) True XLOC_001834
TCONS_00003619 mRNA upstream 5279 2799285 ~ 2801857 (+) True XLOC_001817
TCONS_00003617 mRNA upstream 51758 2715548 ~ 2755378 (+) False XLOC_001816
TCONS_00003618 mRNA upstream 55689 2742499 ~ 2751447 (+) True XLOC_001816
TCONS_00003615 mRNA upstream 115761 2684958 ~ 2691375 (+) True XLOC_001814
TCONS_00003614 mRNA upstream 135841 2669405 ~ 2671295 (+) True XLOC_001813
TCONS_00003622 mRNA downstream 4564 2841205 ~ 2850936 (+) False XLOC_001819
TCONS_00003623 mRNA downstream 4627 2841268 ~ 2850936 (+) False XLOC_001819
TCONS_00003624 mRNA downstream 6282 2842923 ~ 2850163 (+) True XLOC_001819
TCONS_00003625 mRNA downstream 39379 2876020 ~ 2878183 (+) False XLOC_001820
TCONS_00003626 mRNA downstream 39379 2876020 ~ 2882174 (+) False XLOC_001820
TCONS_00003616 other upstream 118455 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003605 other upstream 539779 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003597 other upstream 1142098 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003590 other upstream 2001777 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003583 other upstream 2299880 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003633 other downstream 148403 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003646 other downstream 572142 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003658 other downstream 1656636 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003668 other downstream 2149409 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003675 other downstream 2299201 5135842 ~ 5147582 (+) True XLOC_001854

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000178_00818599_00830970.mRNA True 2460 mRNA 0.50 13 CI01000178 818599 ~ 831436 (+)