RNA id: TCONS_00036010


Basic Information

Item Value
RNA id TCONS_00036010
length 945
RNA type mRNA
GC content 0.52
exon number 5
gene id XLOC_018290
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 39055432 ~ 39188476 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAATGCCGGGAGGCGGTCATTGGTGAATCAAGCTGTCTGCAGTAACGTCAAGAGATTAGTGAATCGCAGCTGGAATGCGAGCTTGATTCACAAAGGCATAAGAGGGAGACAAAGCCACCGAGAAGAGGAAACGCACACCGGACTGCCACATCCCGCACAGCCATGAAGGGAGAGCATTTATTTGCCAACATGAGAAGCGCTCCATTCTTCCAGCGGATTTACCTCTTAGGAGGAGAGGAGTTGGTAGTCCTGCAGTCCACTATGGGAGAGTCCTCGCTGGGAGACAGTTTCCAACAAATCACCGACTTCAATGACCTCCCCACGTCCCTCTTCGCCTGCAATGTGGACCAATCAGTATTTGAAGACCACGAGGGCAAGGAAATGTTTGAAGCGCTCTTCCTCGCGTACGATGAGGGTGTGACGTTCCAGCAGTTTAAGAGCTTCAGACGTGTACGAATCAATTTCAGTAACCCTAAAGCAGCAGCCAGCGCAAGAATAGAGCTGCACGAGACGCCTTTCAGAGGGAAGAAACTCAAACTTTACTTTGCCCAGGTGCAGAACCCAGTATCTGAAGGAGACAATTTGCACCTGGCTCCTCCACAGCCTTCCAAACAGTTCCTCATCTCTCCCCCTGGCTCACCTCCAGTCGGTTGGCAACAGATTGATGAGGCCACACCGGTTATTAACTACGACCTGCTGTATGCAGTTGCCAAGCTTGGCCCAGGTGAGAAGTTCGAGCTCCATGCGGGCACAGAGTCTACGCCCAGTGTGGTGGTCCACGTCTGTGACAGCGACACGGATGAGGAGGAGGAACCAAAGAACAACCCTAAACCAAAAATAATCCAGACCCGACGTCCAGACCTGCCAGTCTCACACTGAACTCTACAGCTCCACACAGAGTCAGGGGGATTTGTACCCTCCACCATCTCCTTCACGGGACCTCTG

Function

GO:

id name namespace
GO:0070884 regulation of calcineurin-NFAT signaling cascade biological_process
GO:0019722 calcium-mediated signaling biological_process
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0008597 calcium-dependent protein serine/threonine phosphatase regulator activity molecular_function

KEGG:

id description
ko04919 Thyroid hormone signaling pathway

ZFIN:

id description
ZDB-GENE-040516-17 Predicted to enable calcium-dependent protein serine/threonine phosphatase regulator activity. Predicted to be involved in calcium-mediated signaling. Predicted to be active in cytoplasm and nucleus. Orthologous to human RCAN2 (regulator of calcineurin 2).

Ensembl:

ensembl_id ENSDART00000152858

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036004 lncRNA downstream 259476 38795957 ~ 38796584 (-) True XLOC_018285
TCONS_00036002 lncRNA downstream 262517 38789928 ~ 38793543 (-) False XLOC_018285
TCONS_00036931 lncRNA downstream 385000 38664764 ~ 38671060 (-) True XLOC_018282
TCONS_00035990 lncRNA downstream 530735 38522660 ~ 38525325 (-) False XLOC_018280
TCONS_00036019 lncRNA upstream 152944 39341420 ~ 39344130 (-) False XLOC_018294
TCONS_00036020 lncRNA upstream 154184 39342660 ~ 39344123 (-) True XLOC_018294
TCONS_00036932 lncRNA upstream 187407 39375883 ~ 39502876 (-) False XLOC_018296
TCONS_00036490 lncRNA upstream 189225 39377701 ~ 39461357 (-) False XLOC_018296
TCONS_00036933 lncRNA upstream 194676 39383152 ~ 39432084 (-) False XLOC_018296
TCONS_00036006 mRNA downstream 138688 38892235 ~ 38917372 (-) True XLOC_018287
TCONS_00036005 mRNA downstream 219899 38831588 ~ 38836161 (-) True XLOC_018286
TCONS_00036001 mRNA downstream 228437 38788319 ~ 38827623 (-) False XLOC_018285
TCONS_00036003 mRNA downstream 254079 38791699 ~ 38801981 (-) False XLOC_018285
TCONS_00036000 mRNA downstream 277581 38765808 ~ 38778479 (-) True XLOC_018284
TCONS_00036011 mRNA upstream 2378 39190854 ~ 39219537 (-) True XLOC_018291
TCONS_00036012 mRNA upstream 71999 39260475 ~ 39265453 (-) False XLOC_018292
TCONS_00036013 mRNA upstream 72132 39260608 ~ 39273987 (-) False XLOC_018292
TCONS_00036014 mRNA upstream 72133 39260609 ~ 39271844 (-) False XLOC_018292
TCONS_00036015 mRNA upstream 78890 39267366 ~ 39273505 (-) True XLOC_018292
TCONS_00036008 other downstream 23124 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036007 other downstream 150447 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00035989 other downstream 533411 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00035984 other downstream 1121745 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035936 other downstream 3510866 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00036068 other upstream 1573836 40762312 ~ 40766351 (-) False XLOC_018321
TCONS_00036069 other upstream 1573856 40762332 ~ 40766350 (-) False XLOC_018321
TCONS_00036070 other upstream 1573875 40762351 ~ 40766618 (-) True XLOC_018321
TCONS_00036071 other upstream 2039588 41228064 ~ 41228179 (-) True XLOC_018322
TCONS_00036072 other upstream 2164370 41352846 ~ 41352960 (-) True XLOC_018324

Expression Profile

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