RNA id: TCONS_00036013


Basic Information

Item Value
RNA id TCONS_00036013
length 1772
RNA type mRNA
GC content 0.47
exon number 9
gene id XLOC_018292
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 39260475 ~ 39273987 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTCATTCTCATCCCGTGAATCATGTCGTCAACATCAGCCATCCTCCTGGTATAAAAACAAACTAGAGGAGGTTCAGTCCTTCTGCGAACAAGAGGAAGAATCAAAGCAGGTGTTAAGCAGGTTTTAATCAAGACTCTTGCAGACACCAATGATGAAGGTCTTGTGGTCTCTGCTGGGGCTGTTTCTCCTCTACCTCTCCACCGAATGTTTGCTGCCACCATCCAAAGAAGAGCTTAACCAGATGTCGCAAGTTGGTGAGAAATACCTGGACAGGCAGATTGAAAATGCCATCAGTGGAGTGAAGGAGATGAAGACTGTGATGGAGCGATCCGAAGAGGAGCACAAGAGGATGCTGTCGGAGATGGAGAAAACCCAAAAAGAGAAAGAGAATGCCCTGAAGATGGCTCAGGAGATGAAGGAGAAGCTCAGTGAGGAGCAGAGTGTGTGTAATGAAACCATGGAGGCTTTGTGGGAAGAGTGTAAGCCCTGCTTGAGGAAGACCTGTGTGAAGTTTTACTCACGCACCTGCAGAAGCGGATCCGGCCTGGTGGGACGTCAGCTGGAGGAGATTTTGAACAGGACTTCTCCCATCTCCATCTTCATAAACGGCCAGAGCATCGAGACCCTGCTGAGTGAGGATCAGCAGCAGACCAGACACTTCCAGGACCTGGAGGAAAGTTACACTGAGGTTTCAGATGGAGTGGAAAATATGTTTACGGACAGCATGAAGGTGTTTGACCACATGCAGATGTTCCACCATCCCGGCTTCTTCCCCAGTAGATTCCAGTTTCCCAGTATGTTTGGTGGGCATGAGGGCTCCACCCATGCTGGCCGCATCTATAGGTCTCCAATGCATGACTCCTTGTTTCACAGCCTCCAAAGCTTGTTCAGGCCTATGGAGAGATCCATGAGCATGTTTGGAAAAAATGAAGAGAGGAACTTCACCTCAGAAGGTTGGAAATTGAATGAGAAAGTTACTACAGATGATAAGATGACTTGCAAGGAAATCCGTCGCAATTCTTTCGGCTGCGTCAAACTGAAAGACGAGTGTGAAAAATGTCAACAGATCCAGCATATTGACTGTTCTGGAAAGAGGCCCCTGGAAGGGCCCCTGAAGGAGGAGCTGGAGAGGGCTCTGGGCAAGGCAGAGGAATTCACCCAAGAGTTCAACAACCTGTTAAATATATTCCAGGAGCAGATGTTCAACACCTCAAGTCTGCTCGACCTGTTCAACAAGCAGTTCGGCTGGGTTTCCTCTCTCGCCAACCATACCCAAAATGAAGACGGCTTCTTTCAGATACAGGCAGTGATGTCCAAAGGCTCAGATAATGCAGAGAATCCTGCTGACACCAGAGTGTCTGTCAAACTGTTTGACGGGCCTGATATGATCTACACAGTGCCAGGAGATATTCCCTGGAGCGACCCAAAATTCTCTGAAGTGGTGGCACAGGAAGCTTTGGATCGCTACAAACAGAACGCTGTAATCACAAAGCTATAGGATTCCCGAGAACAGACACTTCCAATCAAGAAAATATGTTCTCCAAGAAATCTGAAAAGCCCTCCAATATCCTTGCAGTATGAATTACAACACATTATTATACCAAGAAATATTGTACTCAAGTAGCTGGATATCAGATGTCTAGCATCATTCCTGCTGTTCTCATCCTGCTTCACATTCAGGGTCGCTACAGAGATTGTTTAGAATAAGTGCTTATGTAATGAGCTTATAATCGAATGCATTGTCAATCATCAATAAAACACACCAAATCCA

Function

GO:

id name namespace
GO:1901214 regulation of neuron death biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005634 nucleus cellular_component
GO:0051787 misfolded protein binding molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko03110 Chaperones and folding catalysts
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-040426-1774 Predicted to enable misfolded protein binding activity. Acts upstream of or within regulation of neuron death. Predicted to be located in several cellular components, including chromaffin granule; endoplasmic reticulum; and mitochondrial membrane. Predicted to be active in extracellular space and nucleus. Is expressed in several structures, including digestive system; male organism; nervous system; notochord; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in artery disease (multiple); breast cancer; diabetic retinopathy; exfoliation syndrome; and muscular disease (multiple). Orthologous to human CLU (clusterin).

Ensembl:

ensembl_id ENSDART00000127173

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036004 lncRNA downstream 464024 38795957 ~ 38796584 (-) True XLOC_018285
TCONS_00036002 lncRNA downstream 467065 38789928 ~ 38793543 (-) False XLOC_018285
TCONS_00036931 lncRNA downstream 589548 38664764 ~ 38671060 (-) True XLOC_018282
TCONS_00035990 lncRNA downstream 735283 38522660 ~ 38525325 (-) False XLOC_018280
TCONS_00036019 lncRNA upstream 67433 39341420 ~ 39344130 (-) False XLOC_018294
TCONS_00036020 lncRNA upstream 68673 39342660 ~ 39344123 (-) True XLOC_018294
TCONS_00036932 lncRNA upstream 101896 39375883 ~ 39502876 (-) False XLOC_018296
TCONS_00036490 lncRNA upstream 103714 39377701 ~ 39461357 (-) False XLOC_018296
TCONS_00036933 lncRNA upstream 109165 39383152 ~ 39432084 (-) False XLOC_018296
TCONS_00036011 mRNA downstream 41071 39190854 ~ 39219537 (-) True XLOC_018291
TCONS_00036010 mRNA downstream 72132 39056060 ~ 39188476 (-) True XLOC_018290
TCONS_00036009 mRNA downstream 157489 39055432 ~ 39103119 (-) False XLOC_018290
TCONS_00036006 mRNA downstream 343236 38892235 ~ 38917372 (-) True XLOC_018287
TCONS_00036005 mRNA downstream 424447 38831588 ~ 38836161 (-) True XLOC_018286
TCONS_00036016 mRNA upstream 58592 39332579 ~ 39333799 (-) False XLOC_018293
TCONS_00036017 mRNA upstream 58808 39332795 ~ 39333657 (-) True XLOC_018293
TCONS_00036018 mRNA upstream 64713 39338700 ~ 39344116 (-) False XLOC_018294
TCONS_00036021 mRNA upstream 85742 39359729 ~ 39368006 (-) False XLOC_018295
TCONS_00036022 mRNA upstream 85743 39359730 ~ 39368079 (-) False XLOC_018295
TCONS_00036008 other downstream 227672 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036007 other downstream 354995 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00035989 other downstream 737959 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00035984 other downstream 1326293 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035936 other downstream 3715414 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00036068 other upstream 1488325 40762312 ~ 40766351 (-) False XLOC_018321
TCONS_00036069 other upstream 1488345 40762332 ~ 40766350 (-) False XLOC_018321
TCONS_00036070 other upstream 1488364 40762351 ~ 40766618 (-) True XLOC_018321
TCONS_00036071 other upstream 1954077 41228064 ~ 41228179 (-) True XLOC_018322
TCONS_00036072 other upstream 2078859 41352846 ~ 41352960 (-) True XLOC_018324

Expression Profile

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