RNA id: TCONS_00036020


Basic Information

Item Value
RNA id TCONS_00036020
length 566
lncRNA type retained_intron
GC content 0.37
exon number 5
gene id XLOC_018294
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 39338700 ~ 39344130 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGTGGTCGGAATGGATGGTACACGACATGTGCCACTAATACAGATTATTTACCTCTAATGTGTTCAgtgttttgttaaatatatatataaagtgagaCCTTTTAAAGGTTGTGTCTTTTGGCAGAATGGTGTTTTACTTTACAAGCGCCGTTGTCTCACCGCCCCATACTATCTACATGGGCAAAGATAAATATGAAAACGAAGATCTCATCAAATATGGATGGCCAGAAGATATCTGGTTTCACGTAGACAAGCTCTCATCTGCTCATGTATATCTAAGAATGCCTAAGGTATTATGAGAAGTGAAAGTTGGTACAAAACAGTTGTATTATACAATATTGTATATTTACACAATTTGTATTGCCATCGGTTAAAGGGTACAACTATAGATGACATTCCAAAGGAAGTCCTGATCGACTGTGTCCAGCTGGTCAAAAACAACAGCATTCAAGgctgcaaaatgaacaatattaatattgtCTACACACCATGGAGCAATCTGAAGAAAACAGCAGACATGGATATCGGTCAGATAGGATTTCATCGGCAGAAAGAGGTATGATT

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1389 Predicted to enable DNA binding activity. Predicted to be involved in positive regulation of cell motility. Predicted to be located in endomembrane system. Predicted to be integral component of plasma membrane. Orthologous to human CCDC25 (coiled-coil domain containing 25).

Ensembl:

ensembl_id ENSDART00000131601

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036004 lncRNA downstream 546076 38795957 ~ 38796584 (-) True XLOC_018285
TCONS_00036002 lncRNA downstream 549117 38789928 ~ 38793543 (-) False XLOC_018285
TCONS_00036931 lncRNA downstream 671600 38664764 ~ 38671060 (-) True XLOC_018282
TCONS_00035990 lncRNA downstream 817335 38522660 ~ 38525325 (-) False XLOC_018280
TCONS_00036932 lncRNA upstream 31760 39375883 ~ 39502876 (-) False XLOC_018296
TCONS_00036490 lncRNA upstream 33578 39377701 ~ 39461357 (-) False XLOC_018296
TCONS_00036933 lncRNA upstream 39029 39383152 ~ 39432084 (-) False XLOC_018296
TCONS_00036934 lncRNA upstream 53857 39397980 ~ 39431735 (-) False XLOC_018296
TCONS_00036935 lncRNA upstream 60086 39404209 ~ 39404969 (-) True XLOC_018298
TCONS_00036016 mRNA downstream 8861 39332579 ~ 39333799 (-) False XLOC_018293
TCONS_00036017 mRNA downstream 9003 39332795 ~ 39333657 (-) True XLOC_018293
TCONS_00036013 mRNA downstream 68673 39260608 ~ 39273987 (-) False XLOC_018292
TCONS_00036015 mRNA downstream 69155 39267366 ~ 39273505 (-) True XLOC_018292
TCONS_00036014 mRNA downstream 70816 39260609 ~ 39271844 (-) False XLOC_018292
TCONS_00036021 mRNA upstream 15606 39359729 ~ 39368006 (-) False XLOC_018295
TCONS_00036022 mRNA upstream 15607 39359730 ~ 39368079 (-) False XLOC_018295
TCONS_00036023 mRNA upstream 19025 39363148 ~ 39367895 (-) True XLOC_018295
TCONS_00036024 mRNA upstream 45654 39389777 ~ 39391833 (-) False XLOC_018297
TCONS_00036025 mRNA upstream 45695 39389818 ~ 39391492 (-) True XLOC_018297
TCONS_00036008 other downstream 309724 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036007 other downstream 437047 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00035989 other downstream 820011 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00035984 other downstream 1408345 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035936 other downstream 3797466 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00036068 other upstream 1418189 40762312 ~ 40766351 (-) False XLOC_018321
TCONS_00036069 other upstream 1418209 40762332 ~ 40766350 (-) False XLOC_018321
TCONS_00036070 other upstream 1418228 40762351 ~ 40766618 (-) True XLOC_018321
TCONS_00036071 other upstream 1883941 41228064 ~ 41228179 (-) True XLOC_018322
TCONS_00036072 other upstream 2008723 41352846 ~ 41352960 (-) True XLOC_018324

Expression Profile

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