RNA id: TCONS_00036022


Basic Information

Item Value
RNA id TCONS_00036022
length 1958
RNA type mRNA
GC content 0.42
exon number 7
gene id XLOC_018295
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 39359729 ~ 39368079 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAAAGCAAACGAAACGCACGCAATCATTGTTGTCCCACCACGGCCACTGTAGCGTTACGTACGTTTGACGTCAAACAAAACCGGTTAATTTCAAATACGGGCGCGTTGTTCGGCATATCCGGAGTTtacataaatgtaattaaaatagtttatattATCTAAATGTCTCATGTTGCGATTATATTTTGATATGTAGTTTCTGCAGTTGTGTATTAGCGTGATTACATTAGTGTAACTTGTGTAACCTTTAAGGTTTTGTCTTGCTAATCGtggcaatgtaaacaaaatacgATGATGAtcttttattgtttcattttagaCAAATGGAGGCCAGCAAAGAATCACCGAGTGCCTTTAAAACACCTTGCAAGCCTGCTAAAGTGAAAAGTCCAGTCAATGCTTGTGGGACCCCAGTCACCATTCCTGCCTCTCCCTTCATGAAGAAGCTCGGCTGTGGGACTGGAGTCAATGTTTACCTCATGAACAGGATGGGGAAACAGACTCATTCTCCATGGGCTATAAAGAAGATCAACAGCAAGTGTGCTCAAGGTCAAGTGAGTGTTTATCAGAAGCGTCTCTGTGAGGAGGCCAAGATCTTGAAGGACCTCAAGCACCCCAATATTGTTGgcTTCAGAGCTTTTACCACTGCGAAGGATGGCTCGAAGTGTCTAGCGATGGAGTTTGGCGGAGAACAGTCTCTCAATGACCTGATTGAGAAGAGGAGAGAGGAGGGTCTGCAGGCCTTTCCAGTGGACACTATTGAAAAAGTGGCTCTTCATGTCGCTCGCGGTTTACTGtactTGCACAATGAGAAAAAGCTTCTGCATGGAGACATGAAATCATGCAATGTTGTCATCAAGGGCGATTTTGAGAGCATCAAAATCTGTGATGTTGGTGTTTCACTGCCACTGGATGAAAACATGCAAGTGAGTGATCCAAAGGCTCATTACATTGGGACGGAGCCGTGGAAGCCCAAAGAAGCTTTGGAGGATGGAGTAATCACAGATAAAGCTGATATCTTTGCCTATGGACTCACACTGTGGGAAATGATGACGCTTTCTGTTCCTCACCTGGAGATGCTGGACACTGAgggtgatgaagatgatgatgACGAGTCATTTGAGGAGGATTTTGATGAAGATGCATATTATGAGCGGCTGGGGTCTCGACCGGCTCTGGACGCAGTGACTCTGGGAGGCTCTTATCAGAGGATGGTGGAGCTCTTCTGTCTCTGCACAGAGGAGGACCCTCAGAAAAGACCCTCAGCAGCTCACATTGTGCAGGTGCTGGAGTCAAACAGCCAGCTTTCCAAGCAAAACACTGAGGTAATTGTAATCGATTAAATGCTCAGTTGCATTCCTGTCAACGACGAATGCTGAAAATTCTGTTTCTCCGAGTCTGAGTTGTGTGTTTGAGGAaaagaacatcatttttgttttatttcatgctGTGAACTGATGACATTTAGAGGatctttttacaaaaaataattgaaaaggtGCCATGTTTTCATACTCTAATGGCCATTTTTAACTTCAGAATGGTTAAAAAAGcaatatatgctggaataaccctgattttcattCAAATCAAGTCATAATAATTGTTATtcggactgttttttttttttttgtgggggggggggggggtggaagGAAAAACACctggaagaaatgttatcagatcttttattgaataaaacaaatattaacattttcctGAACCCTACTTTTACTAAGAAATTGAGAGAAACTcagaatttgatttatttttggttCCCTTGCTGTATGTTTACCTCTAGGGATTTTACTGTTTGAGATCTTTGTCACGTTGTAAATATGTTTCTGTTTAAAATGAGTCATGTTGCATAAGGTCTTATGTACTCTGCTGATTTCAGACATGCTCTCGATCATACTGTAACTGCAGTCAAATTTGAAATAAACTGTCTGTGAACTTC

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005575 cellular_component cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004708 MAP kinase kinase activity molecular_function

KEGG:

id description
ko01001 Protein kinases

ZFIN:

id description
ZDB-GENE-030523-2 Predicted to enable ATP binding activity; MAP kinase kinase activity; and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human PBK (PDZ binding kinase).

Ensembl:

ensembl_id ENSDART00000180784

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036019 lncRNA downstream 15600 39341420 ~ 39344130 (-) False XLOC_018294
TCONS_00036020 lncRNA downstream 15607 39342660 ~ 39344123 (-) True XLOC_018294
TCONS_00036004 lncRNA downstream 563146 38795957 ~ 38796584 (-) True XLOC_018285
TCONS_00036002 lncRNA downstream 566187 38789928 ~ 38793543 (-) False XLOC_018285
TCONS_00036931 lncRNA downstream 688670 38664764 ~ 38671060 (-) True XLOC_018282
TCONS_00036932 lncRNA upstream 7804 39375883 ~ 39502876 (-) False XLOC_018296
TCONS_00036490 lncRNA upstream 9622 39377701 ~ 39461357 (-) False XLOC_018296
TCONS_00036933 lncRNA upstream 15073 39383152 ~ 39432084 (-) False XLOC_018296
TCONS_00036934 lncRNA upstream 29901 39397980 ~ 39431735 (-) False XLOC_018296
TCONS_00036935 lncRNA upstream 36130 39404209 ~ 39404969 (-) True XLOC_018298
TCONS_00036018 mRNA downstream 15614 39338700 ~ 39344116 (-) False XLOC_018294
TCONS_00036016 mRNA downstream 25931 39332579 ~ 39333799 (-) False XLOC_018293
TCONS_00036017 mRNA downstream 26073 39332795 ~ 39333657 (-) True XLOC_018293
TCONS_00036015 mRNA downstream 86225 39267366 ~ 39273505 (-) True XLOC_018292
TCONS_00036014 mRNA downstream 87886 39260609 ~ 39271844 (-) False XLOC_018292
TCONS_00036024 mRNA upstream 21698 39389777 ~ 39391833 (-) False XLOC_018297
TCONS_00036025 mRNA upstream 21739 39389818 ~ 39391492 (-) True XLOC_018297
TCONS_00036031 mRNA upstream 145356 39513435 ~ 39517164 (-) True XLOC_018300
TCONS_00036032 mRNA upstream 152549 39520628 ~ 39582286 (-) False XLOC_018301
TCONS_00036033 mRNA upstream 208232 39576311 ~ 39582316 (-) True XLOC_018301
TCONS_00036008 other downstream 326794 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036007 other downstream 454117 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00035989 other downstream 837081 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00035984 other downstream 1425415 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035936 other downstream 3814536 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00036068 other upstream 1394233 40762312 ~ 40766351 (-) False XLOC_018321
TCONS_00036069 other upstream 1394253 40762332 ~ 40766350 (-) False XLOC_018321
TCONS_00036070 other upstream 1394272 40762351 ~ 40766618 (-) True XLOC_018321
TCONS_00036071 other upstream 1859985 41228064 ~ 41228179 (-) True XLOC_018322
TCONS_00036072 other upstream 1984767 41352846 ~ 41352960 (-) True XLOC_018324

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_02107558_02110456.mRNA True 2159 mRNA 0.37 8 CI01000029 2107330 ~ 2111349 (-)