RNA id: TCONS_00036934


Basic Information

Item Value
RNA id TCONS_00036934
length 950
lncRNA type read_through
GC content 0.49
exon number 8
gene id XLOC_018296
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 39375883 ~ 39502967 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtttatatacactatgaacagcagctacggtAATTATTCTCTCTGtcctctatttccacctggggatactcaacTCTGAGGTCCTCAGATtttgcggagtcactgattggatccaagaccagcgacgagatgatcccaaggtttccatatccgggaccaggccgtattctgagctgctgctgcgctgatggtcgtggggagtggagaacatgagactgattccagtgacgctctagggacagacgagtcttcgctgaggccagctcagctggtttctctcaagGGGGGAGATACAAATCCATATATTGGCCATTGGAGATGGCTGCTGGTGTCCTGCCTGTTCTCCAGGAGCTGATCACTATTAAACCTGTCCTAAGTGTGATGCATGCTCGAGCCCATGCCACCAAGTGTGAAGTCTTAACgtattatttgtttgttacaACACCGGTAGAATTACTTACATTGCATGCAATGTGGTGGTATCACAAACAAAGTCTCTCTACATCGGTCAGTTTTCACAAGATTTCTGAAGACTTGGCAGAGACTCCTGGAAGAAAGTGCAAGACTAGCTGAATTAAAGACTTACATTGCACAGATGAAGTGGTGTCACGGTGATGGGCAACTGGTGGGATGCCAGATTCATCTCATGGCAATCAAGACACCCCACACAGAAAACTTCAGCAGTCAATTGCGGGGCTTTCCCTTAGTGTGAGGCAGCAGAAGCAAACCCTTTGCTGGCAGAAtgcaagaaggtcgttggttcgagtcctggctgggcctgtgtggaatttgcatgttctccctgtgttcgtgtgggtttcctccgggtgcaccaatttcctccacagtccagacacatgcAGTATACaCTCAGCACCACCTTCAAGATGGGCAGTTTCCAGTGGCACCACGTGGAGGAACGGACTTCGCCACCTATATATACAGGCCAC

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0015711 organic anion transport biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0043034 costamere cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036019 lncRNA downstream 53850 39341420 ~ 39344130 (-) False XLOC_018294
TCONS_00036020 lncRNA downstream 53857 39342660 ~ 39344123 (-) True XLOC_018294
TCONS_00036004 lncRNA downstream 601396 38795957 ~ 38796584 (-) True XLOC_018285
TCONS_00036002 lncRNA downstream 604437 38789928 ~ 38793543 (-) False XLOC_018285
TCONS_00036931 lncRNA downstream 726920 38664764 ~ 38671060 (-) True XLOC_018282
TCONS_00036029 lncRNA upstream 26861 39458596 ~ 39473280 (-) False XLOC_018296
TCONS_00036938 lncRNA upstream 26861 39458596 ~ 39502967 (-) False XLOC_018296
TCONS_00036030 lncRNA upstream 61376 39493111 ~ 39498164 (-) False XLOC_018296
TCONS_00036939 lncRNA upstream 61376 39493111 ~ 39502967 (-) True XLOC_018296
TCONS_00036035 lncRNA upstream 170121 39601856 ~ 39686034 (-) False XLOC_018303
TCONS_00036024 mRNA downstream 6147 39389777 ~ 39391833 (-) False XLOC_018297
TCONS_00036025 mRNA downstream 6488 39389818 ~ 39391492 (-) True XLOC_018297
TCONS_00036022 mRNA downstream 29901 39359730 ~ 39368079 (-) False XLOC_018295
TCONS_00036021 mRNA downstream 29974 39359729 ~ 39368006 (-) False XLOC_018295
TCONS_00036023 mRNA downstream 30085 39363148 ~ 39367895 (-) True XLOC_018295
TCONS_00036031 mRNA upstream 81700 39513435 ~ 39517164 (-) True XLOC_018300
TCONS_00036032 mRNA upstream 88893 39520628 ~ 39582286 (-) False XLOC_018301
TCONS_00036033 mRNA upstream 144576 39576311 ~ 39582316 (-) True XLOC_018301
TCONS_00036034 mRNA upstream 157162 39588897 ~ 39596338 (-) True XLOC_018302
TCONS_00036039 mRNA upstream 260058 39691793 ~ 39735987 (-) False XLOC_018304
TCONS_00036008 other downstream 365044 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036007 other downstream 492367 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00035989 other downstream 875331 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00035984 other downstream 1463665 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035936 other downstream 3852786 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00036068 other upstream 1330577 40762312 ~ 40766351 (-) False XLOC_018321
TCONS_00036069 other upstream 1330597 40762332 ~ 40766350 (-) False XLOC_018321
TCONS_00036070 other upstream 1330616 40762351 ~ 40766618 (-) True XLOC_018321
TCONS_00036071 other upstream 1796329 41228064 ~ 41228179 (-) True XLOC_018322
TCONS_00036072 other upstream 1921111 41352846 ~ 41352960 (-) True XLOC_018324

Expression Profile

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