RNA id: TCONS_00036026


Basic Information

Item Value
RNA id TCONS_00036026
length 977
lncRNA type lincRNA
GC content 0.41
exon number 11
gene id XLOC_018299
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 39410844 ~ 39414258 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAAAAAATGAGAAACGTCTTCATGACATAAACAAGGAATTCAACAAAAACATTCACATGAATGACCCCAGCCAGGTTGTTTTAGaaAATCCGTTGTCCACAGAGAAGGTCATGGACTTGTCACTTGACCACTGACAGCACTGCCAGAAAATATTGTGGCTGCACAAATGACTGCTGCATCACCAGGCATATCATCTGTCACATCTCCTCAGTCATCagtaccaattacagaaaaatctGCTTGTGAACCTACTAAGCCTTGGGAGAGGGACTGGCATCCATTACAAGAAAAACTGctTGATTATGTGCTGGAGCGAAATCGGCCTGGCAGTGAAATATTTGTGAAGGAGGGCCAAGTGTGCCTTATTCGAGAAGAATTTTGGAGTCTTGGATTGCTAAGGGACATGGACTCCCATATTGGAAACGCCTGCATGAAGCTTATTTGTGAAATGGCTCGGCAAATTGGCAAGGACATATACATTAAGGACTTttttgttctccctgtgtggaAAACAACTCCTAACAACATTGTTACTGGATTACCGGAAGATGCAGACTTGAAAGACCTGTTAGCCTTTCCAGCATGGACAAATGCAAATGGACCAGACCACTTCGTTGTCTGTGAAAATTGCTTACCAAGTTGATCATGGGACATGGACTGAAAAGACTGGATATGATTTTCCACCTTTGCCACGTCAGACAAGAGGGAATGATTGTGGTGTTTTTGTACTCATGTACACCCTCTCAATGGTGTGTGGCATTGGGTTTCAATTCGAGGagATGGATATGCCTGTCATTCGTCAGTGGTGGTGTCTTCTCATGGAACGATTTCAGATTGATGGGTATGTCAgttaaattttcttttaaatctgtCAAATTTAAATGTGATATTGTGTCAATACAACAACTCTGTAACACGAATAACAAAACATCCTTAATATCTATCTTACCGGTGACCAGTTATCATGGATTTTGTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000137209

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036935 lncRNA downstream 5875 39404209 ~ 39404969 (-) True XLOC_018298
TCONS_00036019 lncRNA downstream 66714 39341420 ~ 39344130 (-) False XLOC_018294
TCONS_00036020 lncRNA downstream 66721 39342660 ~ 39344123 (-) True XLOC_018294
TCONS_00036004 lncRNA downstream 614260 38795957 ~ 38796584 (-) True XLOC_018285
TCONS_00036002 lncRNA downstream 617301 38789928 ~ 38793543 (-) False XLOC_018285
TCONS_00036028 lncRNA upstream 4825 39419083 ~ 39453973 (-) False XLOC_018296
TCONS_00036936 lncRNA upstream 4932 39419190 ~ 39502877 (-) False XLOC_018296
TCONS_00036937 lncRNA upstream 9260 39423518 ~ 39427658 (-) False XLOC_018296
TCONS_00036029 lncRNA upstream 44338 39458596 ~ 39473280 (-) False XLOC_018296
TCONS_00036938 lncRNA upstream 44338 39458596 ~ 39502967 (-) False XLOC_018296
TCONS_00036024 mRNA downstream 19011 39389777 ~ 39391833 (-) False XLOC_018297
TCONS_00036025 mRNA downstream 19352 39389818 ~ 39391492 (-) True XLOC_018297
TCONS_00036022 mRNA downstream 42765 39359730 ~ 39368079 (-) False XLOC_018295
TCONS_00036021 mRNA downstream 42838 39359729 ~ 39368006 (-) False XLOC_018295
TCONS_00036023 mRNA downstream 42949 39363148 ~ 39367895 (-) True XLOC_018295
TCONS_00036031 mRNA upstream 99177 39513435 ~ 39517164 (-) True XLOC_018300
TCONS_00036032 mRNA upstream 106370 39520628 ~ 39582286 (-) False XLOC_018301
TCONS_00036033 mRNA upstream 162053 39576311 ~ 39582316 (-) True XLOC_018301
TCONS_00036034 mRNA upstream 174639 39588897 ~ 39596338 (-) True XLOC_018302
TCONS_00036039 mRNA upstream 277535 39691793 ~ 39735987 (-) False XLOC_018304
TCONS_00036008 other downstream 377908 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036007 other downstream 505231 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00035989 other downstream 888195 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00035984 other downstream 1476529 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035936 other downstream 3865650 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00036068 other upstream 1348054 40762312 ~ 40766351 (-) False XLOC_018321
TCONS_00036069 other upstream 1348074 40762332 ~ 40766350 (-) False XLOC_018321
TCONS_00036070 other upstream 1348093 40762351 ~ 40766618 (-) True XLOC_018321
TCONS_00036071 other upstream 1813806 41228064 ~ 41228179 (-) True XLOC_018322
TCONS_00036072 other upstream 1938588 41352846 ~ 41352960 (-) True XLOC_018324

Expression Profile

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