RNA id: TCONS_00036032


Basic Information

Item Value
RNA id TCONS_00036032
length 1486
RNA type mRNA
GC content 0.46
exon number 10
gene id XLOC_018301
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 39520628 ~ 39582316 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTTTGCGCTAATATGGAAGTTAAGCAGGGCAATTGTTTCATTTGTACAGTACAATTATAGGTTTAATCGTTTTAAACGTTTTCCTAGGTGACAGTACGTATATTGGTGGTTTTCCACAAACAAAAAACGTTATTTATTGTAAATGGGTTGTTCGTGGACTTTAGACTATTTCTGCACTCGTTGAGTTATTAGAGAAACGGTATGAAGTCGTTTAAGTCTCCGGGACGTCATGGATATGCGGTGGAGATTTCACCTTTTTTGCCTTCTACGATGGCATGTGCTTCCTCTCAGTATTATGGAATAGCAGGATGTGGGACACTTTTTGTGCTGGAGCAACGGGAGACAGATGTTTCACTTGTGAAgagTTTTGACTGGAACGATGGTCTTTTCGATGTGACATGGAGTGAGAACAATGAGCATGTGCTAGTGACCGGAGGAGGTGACGGATCTCTGCAGATCTGGGATACAGCCAATCCACAAGGTCTTCTGCAGGTGCTGAAAGGCCACACACAAGAGGTGTATTCAGTAGACTGGAGTCAAACACGTGCTGAAAACCTGCTAGTATCAGGATCTTGGGACCACACAGCCAAAGTGTGGGATCCAGTGCAGTGTCAGTTAGTGAACTCCCTTCAGGGTCATGAGGGTGTCATCTACAGCACCATCTGGTCTCCTCATATCCCAGCATGCTTTGCTTCGGCCTCAGGAGACGGCACTCTGCGAGTATGGGATGTTAAGGCAGGGTCATGCAGATTGGTCATCCCTGCACACAAATCTGAAATCCTTAGCTGTGATTGGTGCAAATATGACCAGAATGTTCTAGTCACCGGAGCTGTTGACTGCAGTCTCCGAGTTTGGGACCTGAGGAACATCCGGCATCCCGTCGCTCAAATGTCAGGCCATTCCTACGCCATCCGCAGAGTAAAGTTCTGCCCGTTTTACAAGACCGTCCTAGCGTCCTGCTCATATGATTTCACAGTCAGATTCTGGGATTATTCCAAGAGCCAGGCGCTGCTGGAGACGCTGGAGCACCACTCGGAGTTCGTGTGTGGCCTGGATTTCAACCTGCACATCCCTAACCAGGTTGTGGACTGCTCCTGGGACGAGACTGTGAAAGTGTTCAGTCCTTCATCTCTGGCTGCGGTGTAGAAACCCGTTCACCATGTACTGAGGTTTCTGCAGGACATAAGGGAATCACGGCTCCATTTCAATCACAGGTGCAGAGTTTGCCAAGATTTCACTGCAGTTTTCCTAATGACGCTGTTACAGCAGAACCCGAGGGAGCGCTAGAATCTCACACCTCGCCTTTAGGAGTGTGATGTTATTATAGTGCTTGATGAGTGTAAAATCAAGCTAAAGTGAGTTTACCTTAAACGGTGAGTGCCTTATTGATGTCTAATAATTTTGTGGTAGGTGTATGTTGTTTTTCTCTAATGGATTAAATCCGGTTTGTTAAACTTGTGTTAATAAATAAGAGCAGTTCATC

Function

GO:

id name namespace
GO:0016558 protein import into peroxisome matrix biological_process
GO:0005782 peroxisomal matrix cellular_component
GO:0005829 cytosol cellular_component
GO:0005053 peroxisome matrix targeting signal-2 binding molecular_function

KEGG:

id description
ko04146 Peroxisome

ZFIN:

id description
ZDB-GENE-050320-105 Predicted to enable peroxisome matrix targeting signal-2 binding activity. Predicted to be involved in protein import into peroxisome matrix. Predicted to be active in cytosol and peroxisomal matrix. Human ortholog(s) of this gene implicated in peroxisomal biogenesis disorder and rhizomelic chondrodysplasia punctata type 1. Orthologous to human PEX7 (peroxisomal biogenesis factor 7).

Ensembl:

ensembl_id ENSDART00000062414

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036938 lncRNA downstream 17661 39458596 ~ 39502967 (-) False XLOC_018296
TCONS_00036939 lncRNA downstream 17661 39493111 ~ 39502967 (-) True XLOC_018296
TCONS_00036030 lncRNA downstream 22464 39493111 ~ 39498164 (-) False XLOC_018296
TCONS_00036029 lncRNA downstream 47348 39458596 ~ 39473280 (-) False XLOC_018296
TCONS_00036937 lncRNA downstream 92970 39423518 ~ 39427658 (-) False XLOC_018296
TCONS_00036035 lncRNA upstream 19570 39601856 ~ 39686034 (-) False XLOC_018303
TCONS_00036036 lncRNA upstream 19570 39601856 ~ 39686069 (-) False XLOC_018303
TCONS_00036037 lncRNA upstream 38064 39620350 ~ 39686034 (-) False XLOC_018303
TCONS_00036038 lncRNA upstream 95235 39677521 ~ 39686127 (-) True XLOC_018303
TCONS_00036940 lncRNA upstream 161909 39744195 ~ 39746437 (-) True XLOC_018305
TCONS_00036031 mRNA downstream 3464 39513435 ~ 39517164 (-) True XLOC_018300
TCONS_00036024 mRNA downstream 128795 39389777 ~ 39391833 (-) False XLOC_018297
TCONS_00036025 mRNA downstream 129136 39389818 ~ 39391492 (-) True XLOC_018297
TCONS_00036022 mRNA downstream 152549 39359730 ~ 39368079 (-) False XLOC_018295
TCONS_00036021 mRNA downstream 152622 39359729 ~ 39368006 (-) False XLOC_018295
TCONS_00036034 mRNA upstream 6611 39588897 ~ 39596338 (-) True XLOC_018302
TCONS_00036039 mRNA upstream 109507 39691793 ~ 39735987 (-) False XLOC_018304
TCONS_00036040 mRNA upstream 117724 39700010 ~ 39735952 (-) False XLOC_018304
TCONS_00036041 mRNA upstream 130825 39713111 ~ 39735961 (-) True XLOC_018304
TCONS_00036042 mRNA upstream 167162 39749448 ~ 39789036 (-) False XLOC_018306
TCONS_00036008 other downstream 487692 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036007 other downstream 615015 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00035989 other downstream 997979 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00035984 other downstream 1586313 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035936 other downstream 3975434 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00036068 other upstream 1180026 40762312 ~ 40766351 (-) False XLOC_018321
TCONS_00036069 other upstream 1180046 40762332 ~ 40766350 (-) False XLOC_018321
TCONS_00036070 other upstream 1180065 40762351 ~ 40766618 (-) True XLOC_018321
TCONS_00036071 other upstream 1645778 41228064 ~ 41228179 (-) True XLOC_018322
TCONS_00036072 other upstream 1770560 41352846 ~ 41352960 (-) True XLOC_018324

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_02125408_02143865.mRNA True 1283 mRNA 0.51 12 CI01000029 2125322 ~ 2143865 (-)