Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00036034 |
| length | 1816 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 5 |
| gene id | XLOC_018302 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007131.7 |
| NCBI id | CM002904.2 |
| chromosome length | 55201332 |
| location | 39588897 ~ 39596338 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0060853 | Notch signaling pathway involved in arterial endothelial cell fate commitment | biological_process |
| GO:0072359 | circulatory system development | biological_process |
| GO:0007219 | Notch signaling pathway | biological_process |
| GO:0007507 | heart development | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0048514 | blood vessel morphogenesis | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0048844 | artery morphogenesis | biological_process |
| GO:0001568 | blood vessel development | biological_process |
| GO:0001570 | vasculogenesis | biological_process |
| GO:0009952 | anterior/posterior pattern specification | biological_process |
| GO:0035912 | dorsal aorta morphogenesis | biological_process |
| GO:0045892 | negative regulation of transcription, DNA-templated | biological_process |
| GO:0050767 | regulation of neurogenesis | biological_process |
| GO:0060840 | artery development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005515 | protein binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-000526-1 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within with a positive effect on cardiac muscle cell proliferation. Acts upstream of or within circulatory system development and negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including alar plate midbrain region; cardiovascular system; hematopoietic system; mesoderm; and nervous system. Orthologous to human HEY2 (hes related family bHLH transcription factor with YRPW motif 2). |
| ensembl_id | ENSDART00000023531 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00036938 | lncRNA | downstream | 85930 | 39458596 ~ 39502967 (-) | False | XLOC_018296 |
| TCONS_00036939 | lncRNA | downstream | 85930 | 39493111 ~ 39502967 (-) | True | XLOC_018296 |
| TCONS_00036030 | lncRNA | downstream | 90733 | 39493111 ~ 39498164 (-) | False | XLOC_018296 |
| TCONS_00036029 | lncRNA | downstream | 115617 | 39458596 ~ 39473280 (-) | False | XLOC_018296 |
| TCONS_00036937 | lncRNA | downstream | 161239 | 39423518 ~ 39427658 (-) | False | XLOC_018296 |
| TCONS_00036035 | lncRNA | upstream | 5518 | 39601856 ~ 39686034 (-) | False | XLOC_018303 |
| TCONS_00036036 | lncRNA | upstream | 5518 | 39601856 ~ 39686069 (-) | False | XLOC_018303 |
| TCONS_00036037 | lncRNA | upstream | 24012 | 39620350 ~ 39686034 (-) | False | XLOC_018303 |
| TCONS_00036038 | lncRNA | upstream | 81183 | 39677521 ~ 39686127 (-) | True | XLOC_018303 |
| TCONS_00036940 | lncRNA | upstream | 147857 | 39744195 ~ 39746437 (-) | True | XLOC_018305 |
| TCONS_00036033 | mRNA | downstream | 6581 | 39576311 ~ 39582316 (-) | True | XLOC_018301 |
| TCONS_00036032 | mRNA | downstream | 6611 | 39520628 ~ 39582286 (-) | False | XLOC_018301 |
| TCONS_00036031 | mRNA | downstream | 71733 | 39513435 ~ 39517164 (-) | True | XLOC_018300 |
| TCONS_00036024 | mRNA | downstream | 197064 | 39389777 ~ 39391833 (-) | False | XLOC_018297 |
| TCONS_00036025 | mRNA | downstream | 197405 | 39389818 ~ 39391492 (-) | True | XLOC_018297 |
| TCONS_00036039 | mRNA | upstream | 95455 | 39691793 ~ 39735987 (-) | False | XLOC_018304 |
| TCONS_00036040 | mRNA | upstream | 103672 | 39700010 ~ 39735952 (-) | False | XLOC_018304 |
| TCONS_00036041 | mRNA | upstream | 116773 | 39713111 ~ 39735961 (-) | True | XLOC_018304 |
| TCONS_00036042 | mRNA | upstream | 153110 | 39749448 ~ 39789036 (-) | False | XLOC_018306 |
| TCONS_00036043 | mRNA | upstream | 156045 | 39752383 ~ 39789039 (-) | False | XLOC_018306 |
| TCONS_00036008 | other | downstream | 555961 | 39032821 ~ 39032936 (-) | True | XLOC_018289 |
| TCONS_00036007 | other | downstream | 683284 | 38905531 ~ 38905613 (-) | True | XLOC_018288 |
| TCONS_00035989 | other | downstream | 1066248 | 38518697 ~ 38522649 (-) | False | XLOC_018280 |
| TCONS_00035984 | other | downstream | 1654582 | 37930687 ~ 37934315 (-) | True | XLOC_018273 |
| TCONS_00035936 | other | downstream | 4043703 | 35541282 ~ 35545194 (-) | True | XLOC_018246 |
| TCONS_00036068 | other | upstream | 1165974 | 40762312 ~ 40766351 (-) | False | XLOC_018321 |
| TCONS_00036069 | other | upstream | 1165994 | 40762332 ~ 40766350 (-) | False | XLOC_018321 |
| TCONS_00036070 | other | upstream | 1166013 | 40762351 ~ 40766618 (-) | True | XLOC_018321 |
| TCONS_00036071 | other | upstream | 1631726 | 41228064 ~ 41228179 (-) | True | XLOC_018322 |
| TCONS_00036072 | other | upstream | 1756508 | 41352846 ~ 41352960 (-) | True | XLOC_018324 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000029_02145528_02148347.mRNA | True | 2835 | mRNA | 0.43 | 5 | CI01000029 | 2144450 ~ 2149108 (-) |
