RNA id: TCONS_00036035


Basic Information

Item Value
RNA id TCONS_00036035
length 768
lncRNA type lincRNA
GC content 0.45
exon number 7
gene id XLOC_018303
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 39601856 ~ 39686127 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTGTTTGTAAGTTTCTACGACAGCAAAGAAGCTGAAGCTGATATAAGAGACATTTATCAACAGTTTTAAGAAAATttgagaagcagcagcagctatGGACCCTAATGTCAACCGTGGTTCGCTCGAACTTGCCTGAGGACACTCCAACGTCAGCGAACCGGATGTAAAACAGTCCGAAAGAGGGAATTGCCTGCTGTTGTAATGACAGACTGCCGCCGCTAGATAGAGATAGAATACAGGAGTCAACAGGGTCTTACAATTCAAGCACAACTCAACGATGGCAAACCAGTCAGCATAATGTATTTCTTGGGCAGCAGAGAGATCAAGCAATGGAACAGGAAACACACAGATGtttactatggacaattttgCTCTGACACACAGTGACATGTCCTATTGCGTTTTCTGCCAGTGGGAAAGGCATCAGCGGAGTCTCTGGGAGCTGTCCTGAACACCTCTCGCTCTGCGTTTCCCCTGGTGTGAATGTGGAACTCTAAATCAATCTCATCACAGACTTCCTACAATATCTACAAGACCTCTGCTGCATTGAGTATTCAGACCAAATGTTCATCATAAGGTTCCGACCTCCAACAGTGGAAGCGAAGCTATTGTGTAAATACCATAGGTGCCACAGTGAATAAAAGGTCACACCTGGGAGAGCTGCTGCCTGCTATGAGAGACTGTTGACAGCTTGATTGGAGCTACTGTATCTGTGCTGACCACTGGATCTGGAGCAGCTCTACACAGGTTTGTGTATTttgttaaa

Function

GO:

id name namespace
GO:0034587 piRNA metabolic process biological_process
GO:0035770 ribonucleoprotein granule cellular_component
GO:0071546 pi-body cellular_component
GO:0036464 cytoplasmic ribonucleoprotein granule cellular_component
GO:0034584 piRNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000132138

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036938 lncRNA downstream 98889 39458596 ~ 39502967 (-) False XLOC_018296
TCONS_00036939 lncRNA downstream 98889 39493111 ~ 39502967 (-) True XLOC_018296
TCONS_00036936 lncRNA downstream 98979 39419190 ~ 39502877 (-) False XLOC_018296
TCONS_00036932 lncRNA downstream 98980 39375883 ~ 39502876 (-) False XLOC_018296
TCONS_00036030 lncRNA downstream 103692 39493111 ~ 39498164 (-) False XLOC_018296
TCONS_00036940 lncRNA upstream 58161 39744195 ~ 39746437 (-) True XLOC_018305
TCONS_00036941 lncRNA upstream 132993 39819027 ~ 39832119 (-) False XLOC_018307
TCONS_00036942 lncRNA upstream 207040 39893074 ~ 40019218 (-) False XLOC_018307
TCONS_00036047 lncRNA upstream 233198 39919232 ~ 39920174 (-) True XLOC_018308
TCONS_00036943 lncRNA upstream 529335 40215369 ~ 40254480 (-) False XLOC_018309
TCONS_00036034 mRNA downstream 5518 39588897 ~ 39596338 (-) True XLOC_018302
TCONS_00036033 mRNA downstream 19540 39576311 ~ 39582316 (-) True XLOC_018301
TCONS_00036032 mRNA downstream 19570 39520628 ~ 39582286 (-) False XLOC_018301
TCONS_00036031 mRNA downstream 84692 39513435 ~ 39517164 (-) True XLOC_018300
TCONS_00036024 mRNA downstream 210023 39389777 ~ 39391833 (-) False XLOC_018297
TCONS_00036039 mRNA upstream 5759 39691793 ~ 39735987 (-) False XLOC_018304
TCONS_00036040 mRNA upstream 13976 39700010 ~ 39735952 (-) False XLOC_018304
TCONS_00036041 mRNA upstream 27077 39713111 ~ 39735961 (-) True XLOC_018304
TCONS_00036042 mRNA upstream 63414 39749448 ~ 39789036 (-) False XLOC_018306
TCONS_00036043 mRNA upstream 66349 39752383 ~ 39789039 (-) False XLOC_018306
TCONS_00036008 other downstream 568920 39032821 ~ 39032936 (-) True XLOC_018289
TCONS_00036007 other downstream 696243 38905531 ~ 38905613 (-) True XLOC_018288
TCONS_00035989 other downstream 1079207 38518697 ~ 38522649 (-) False XLOC_018280
TCONS_00035984 other downstream 1667541 37930687 ~ 37934315 (-) True XLOC_018273
TCONS_00035936 other downstream 4056662 35541282 ~ 35545194 (-) True XLOC_018246
TCONS_00036068 other upstream 1076278 40762312 ~ 40766351 (-) False XLOC_018321
TCONS_00036069 other upstream 1076298 40762332 ~ 40766350 (-) False XLOC_018321
TCONS_00036070 other upstream 1076317 40762351 ~ 40766618 (-) True XLOC_018321
TCONS_00036071 other upstream 1542030 41228064 ~ 41228179 (-) True XLOC_018322
TCONS_00036072 other upstream 1666812 41352846 ~ 41352960 (-) True XLOC_018324

Expression Profile

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