RNA id: TCONS_00003624


Basic Information

Item Value
RNA id TCONS_00003624
length 639
RNA type mRNA
GC content 0.49
exon number 7
gene id XLOC_001819
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 2841205 ~ 2850936 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAAATGCACTATTGCAGGTCTTGCCCAGAAACACTATGAAGCTCTACAGTCTCAGTGTCTTGCATAAAGGCTCAACGAAGGCCAACCTGCTGAAGGCGGCGTACGATCTGTCATCGTTCAGTTTCTTCCAGAGATCCAGtgtACAGGAGTTTATGACATTCACCAGCGCCCTGATCGTCGAGCGTTCAGCATTAGGAAGTCGTGCGTCTGTCAAAGAACAAGAGTACTTGTGCCACGTGTACGTGCGGAATGACAATCTGGGTGGTGTTGTGATCGCGGACAGTGAATATCCCTCCCGAGTCTGCTTCACTTTACTGGACAAGGTTCTGGATGAGTTCTCCAGACAGGTCAACAGTATAGACTGGCCTTCCGGGTCACCGGCGACCATTCAGTACACAGCCCTGGACAGTCATCTGGCTCGATACCAGAATCCACGCGAGGCTGACGCCATGACCAAAGTGCAGGCAGAACTGGATGAAACCAAAATTATTTTGCACAACACAATGGAGTCACTGCTGGAGAGAGGAGAGAAACTGGATGATTTAGTTCAGAAATCCGAACATCTGGGAAACCAGTCTAAAGCCTTTTATAAAACGGCAAGAAAGCAGAACTCGTGCTGCGAGATCATGTGATCACGA

Function

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005829 cytosol cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function

KEGG:

id description
ko04130 SNARE interactions in vesicular transport
ko04138 Autophagy - yeast
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-733 Predicted to enable acyltransferase activity, transferring groups other than amino-acyl groups. Predicted to act upstream of or within protein transport and vesicle-mediated transport. Predicted to be located in Golgi membrane; cytoplasmic vesicle membrane; and cytosol. Predicted to be integral component of membrane. Orthologous to human YKT6 (YKT6 v-SNARE homolog).

Ensembl:

ensembl_id ENSDART00000181895

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005809 lncRNA upstream 338881 2499533 ~ 2504042 (+) True XLOC_001807
TCONS_00005808 lncRNA upstream 405015 2402308 ~ 2437908 (+) True XLOC_001806
TCONS_00005807 lncRNA upstream 438145 2402308 ~ 2404778 (+) False XLOC_001806
TCONS_00003604 lncRNA upstream 851455 1982550 ~ 1991468 (+) False XLOC_001804
TCONS_00005670 lncRNA downstream 127372 2977535 ~ 2979504 (+) True XLOC_001823
TCONS_00005810 lncRNA downstream 412415 3262578 ~ 3269818 (+) True XLOC_001827
TCONS_00005671 lncRNA downstream 449721 3299884 ~ 3312438 (+) True XLOC_001828
TCONS_00005672 lncRNA downstream 486692 3336855 ~ 3341616 (+) True XLOC_001829
TCONS_00005811 lncRNA downstream 1006904 3857067 ~ 3857885 (+) True XLOC_001834
TCONS_00003621 mRNA upstream 4733 2807176 ~ 2838190 (+) True XLOC_001818
TCONS_00003620 mRNA upstream 6282 2807136 ~ 2836641 (+) False XLOC_001818
TCONS_00003619 mRNA upstream 41066 2799285 ~ 2801857 (+) True XLOC_001817
TCONS_00003617 mRNA upstream 87545 2715548 ~ 2755378 (+) False XLOC_001816
TCONS_00003625 mRNA downstream 25857 2876020 ~ 2878183 (+) False XLOC_001820
TCONS_00003626 mRNA downstream 25857 2876020 ~ 2882174 (+) False XLOC_001820
TCONS_00003627 mRNA downstream 25857 2876020 ~ 2898402 (+) False XLOC_001820
TCONS_00003628 mRNA downstream 25891 2876054 ~ 2880278 (+) False XLOC_001820
TCONS_00003629 mRNA downstream 26215 2876378 ~ 2897747 (+) True XLOC_001820
TCONS_00003616 other upstream 154242 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003605 other upstream 575566 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003597 other upstream 1177885 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003590 other upstream 2037564 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003583 other upstream 2335667 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003633 other downstream 134881 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003646 other downstream 558620 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003658 other downstream 1643114 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003668 other downstream 2135887 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003675 other downstream 2285679 5135842 ~ 5147582 (+) True XLOC_001854

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000178_00832919_00837484.mRNA True 975 mRNA 0.44 7 CI01000178 832919 ~ 837787 (+)