Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00003626 |
| length | 789 |
| RNA type | mRNA |
| GC content | 0.53 |
| exon number | 8 |
| gene id | XLOC_001820 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 2876020 ~ 2898402 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0043065 | positive regulation of apoptotic process | biological_process |
| GO:0008380 | RNA splicing | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0044609 | DBIRD complex | cellular_component |
| GO:0030374 | nuclear receptor coactivator activity | molecular_function |
| GO:0000993 | RNA polymerase II complex binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-091204-207 | Predicted to enable RNA polymerase II complex binding activity and nuclear receptor coactivator activity. Predicted to be involved in RNA splicing and regulation of transcription, DNA-templated. Predicted to act upstream of or within positive regulation of apoptotic process. Predicted to be located in cytoplasm. Predicted to be part of DBIRD complex. Predicted to be active in nucleus. Orthologous to human CCAR2 (cell cycle and apoptosis regulator 2). |
| ensembl_id | ENSDART00000133128 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005809 | lncRNA | upstream | 371978 | 2499533 ~ 2504042 (+) | True | XLOC_001807 |
| TCONS_00005808 | lncRNA | upstream | 438112 | 2402308 ~ 2437908 (+) | True | XLOC_001806 |
| TCONS_00005807 | lncRNA | upstream | 471242 | 2402308 ~ 2404778 (+) | False | XLOC_001806 |
| TCONS_00003604 | lncRNA | upstream | 884552 | 1982550 ~ 1991468 (+) | False | XLOC_001804 |
| TCONS_00005670 | lncRNA | downstream | 95361 | 2977535 ~ 2979504 (+) | True | XLOC_001823 |
| TCONS_00005810 | lncRNA | downstream | 380404 | 3262578 ~ 3269818 (+) | True | XLOC_001827 |
| TCONS_00005671 | lncRNA | downstream | 417710 | 3299884 ~ 3312438 (+) | True | XLOC_001828 |
| TCONS_00005672 | lncRNA | downstream | 454681 | 3336855 ~ 3341616 (+) | True | XLOC_001829 |
| TCONS_00005811 | lncRNA | downstream | 974893 | 3857067 ~ 3857885 (+) | True | XLOC_001834 |
| TCONS_00003622 | mRNA | upstream | 25084 | 2841205 ~ 2850936 (+) | False | XLOC_001819 |
| TCONS_00003623 | mRNA | upstream | 25084 | 2841268 ~ 2850936 (+) | False | XLOC_001819 |
| TCONS_00003624 | mRNA | upstream | 25857 | 2842923 ~ 2850163 (+) | True | XLOC_001819 |
| TCONS_00003621 | mRNA | upstream | 37830 | 2807176 ~ 2838190 (+) | True | XLOC_001818 |
| TCONS_00003620 | mRNA | upstream | 39379 | 2807136 ~ 2836641 (+) | False | XLOC_001818 |
| TCONS_00003630 | mRNA | downstream | 16934 | 2899108 ~ 2921297 (+) | True | XLOC_001821 |
| TCONS_00003631 | mRNA | downstream | 93800 | 2975974 ~ 3026520 (+) | False | XLOC_001822 |
| TCONS_00003632 | mRNA | downstream | 98916 | 2981090 ~ 3026318 (+) | False | XLOC_001822 |
| TCONS_00003636 | mRNA | downstream | 167462 | 3049636 ~ 3106762 (+) | False | XLOC_001824 |
| TCONS_00003637 | mRNA | downstream | 167462 | 3049636 ~ 3106762 (+) | False | XLOC_001824 |
| TCONS_00003616 | other | upstream | 187339 | 2688565 ~ 2688681 (+) | True | XLOC_001815 |
| TCONS_00003605 | other | upstream | 608663 | 2175583 ~ 2267357 (+) | False | XLOC_001805 |
| TCONS_00003597 | other | upstream | 1210982 | 1664922 ~ 1665038 (+) | True | XLOC_001797 |
| TCONS_00003590 | other | upstream | 2070661 | 805244 ~ 805359 (+) | True | XLOC_001790 |
| TCONS_00003583 | other | upstream | 2368764 | 506563 ~ 507256 (+) | True | XLOC_001784 |
| TCONS_00003633 | other | downstream | 102870 | 2985044 ~ 3026523 (+) | True | XLOC_001822 |
| TCONS_00003646 | other | downstream | 526609 | 3408783 ~ 3408900 (+) | True | XLOC_001830 |
| TCONS_00003658 | other | downstream | 1611103 | 4493277 ~ 4493358 (+) | True | XLOC_001842 |
| TCONS_00003668 | other | downstream | 2103876 | 4986050 ~ 4987483 (+) | True | XLOC_001850 |
| TCONS_00003675 | other | downstream | 2253668 | 5135842 ~ 5147582 (+) | True | XLOC_001854 |
