RNA id: TCONS_00003632


Basic Information

Item Value
RNA id TCONS_00003632
length 4155
RNA type mRNA
GC content 0.51
exon number 17
gene id XLOC_001822
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 2975974 ~ 3026523 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGACAGTTATTTTAAGGCTGCTGTGTGCGACCTGGACAAGCTTTTGGATGACTTTGAACTCAGTGCAGaAGAGCTTGAGAGCAAACCGGGCACGTATGTAAGCCCTCCTTGTCCGGACTCTACGCTCATCCCTGGTCGCTTTATACCAGAGCAGCACACAGTCCCACAAACACTCCCAGATGTCAACGCACTGCACTATGGACTTACATCGCAAAGTATTGACTCAAACCAAAAAGATTCCTATTCAAATGAATGGCCCCTCACAGGTGTGGACCTCTTGTCGTCCGTTGATAGTAGAGGCATCAAAAGTTCAGCTCCTCCTTGTCCTGACCGCTCGCTGAAGCCTGTGTGTGACCTGGTGAACGATACTGGTTCTGCAAACCTCCAGCAAGCTGATAGTCAGGAAGACTTTAAAGAGCTGGACATTCCAGACGTACAATCGACTGAGGGGCTGCTTGTGGACTTTGAGAGTCCAGAAGATCTTTCCAAACCCAGCCACAGTGAAATACTCAAACGTGACTCTGAGATTAATTGCAATTCCCTCAGTTTGCTGGATGTCATATTACCGGTTGTTGGCGAGCCTTATACTTCGAGTAGCATTACACTTTTGGAGACTGAAAGTTCCTGTCCTGAAGCCTCTAACTCAAACGGGCAGAATGATCGTCCGTGGAGTCAGATGGACGAAGATGATGTTTGTAACACATGTCCTAGTACTACAGAGGAAAATATTTCAGCATTCAGTGAAGAGCATGCTGTGTCGCTCCAGCCCGACTCAACATCTGAAGATGTCAGAAATCCAGAGGATTTAACTGGAAGTCCCACTTCGGAGAAGGAATCTTCTCTGTCTTGCTTGCCAATGGCTGTATCTATGTGTGGTTCCCTTGTGGCGACTTTAGACCCTCAAAAGGCAGCAGTGGTCGAAACCAAAGATGAGGCTGAACTAGAAACAAAATCAGCAATTCAAGAAGCTGAAGAGTTAACTCTTCCATTAGAAGAGCCAGTGCCTCCATTCTCCTCCAGCAGGCCTGATTCTTCACCTGAGGATGAACCTGAGATTGTCCAGATCATGTCGAACCCTGCTGCTGCAGGCCACTACCCTGAAAGAAACTTCAAACGCACCTTATCGCCAACGGACAAATTAACTTGTAGAGATTTGGGTGCAAGCAATCCGTCTCCATCCTATTCAGAAAGTCCAAATTATTCGTACGAGTTCGGTATTGCCAACGATTACCTACCTGAAAGCGACCAGACAGTGATGATGGTCACGGACGAGGAACTTGATGCCTTTCTAATGGGTCAAGGTGTGAAAATCAACCCCGATGCAGCGGTGGAAAAATTCAGTGATGACGGCTTTTCAGAATTTAATGGAAATGCTGAAAGAGATGGCTTCTTGGATGAGGAGTTGCAGAGTTGTAAAGTCGAGACTTTTGCCTCACCTGAGAGTGATGGCTCACAGTATCTGGAGGAGAGCGAAGGGTCAAACGTTTCCTCTTCATCTCAAGACAGCAGCCCGCTGAGAGCAGACTCTACTCAAACAATTACTCATGAAACCGTAACCAGCCCTGTTGAGATTCAATCCGTTTGCTCCCCGAACCAAGAGTCAACTTACGGTGGTGCAAGACCAAAGCAGTTGTCCAACCAAACCGTACGGCCTCCATCAGAACGACACAGAATCAGCCATGCCGAAGCCGATGTGGGAGGATCAGCGAATGGCTCGCAAGTGTCTCCTAACCAAGATGAAATCAACTGTGAACCACCGTCCTATCAGCAGTATGATAGCAGCTATGGCTGCGATGAGCTCTCGGAGCCTCCGCCTTACCCAGGAGAGATGTTGGAGGACGGGGAGTCATCTGTTGATCTGTCTGGACATGGGGCTGAAGGTTTGGGGTCAAAGCAGCCACCCTGGGTCCCTGACTCTGAGGCTCCTAACTGTATGAATTGTATGCAAAAGTTTACCTTTACTAAGAGGAGACACCATTGCAGAGCTTGTGGAAAAGTTTACTGTGCCAGCTGCTGCAATCGCAAATGTAGACTGAAATATCTGGATAAAGAGGCCCGGGTTTGTGTCATCTGCCATGTTACCATACAGAGAGctcaAGCCCATGAGAGAATGATGAGCCCCACTGGGCCCAGTCCCAATCCCAACATCCCATCAGAGTACTGCTCCACCATACCGCCCATGCAGCAGGCCCGCGCCGCCGGGACTCTCAACTCTCCCCCACCCACCGTCATGGTCCCCGTGTCTGTCCTCAAACACCCCGGTAATGACGgTTTTCCACGCGAGCAGAAGCATGTGTGGTTTGCCGATGGCATCCTGCCGAACGGTGAGGTAGCCGACACGACCAAACTCTCTGTGCAAACACGAAGATCTTCTCAGGAGTCGAGCCCAGTAACGCCAGACCCGCCGGCGCCTGACGATAAGTTTCCGGATGAGCGTGAGGAGAGTGTTGGAGGCAGATCTGACAGCCCTGTGGAGGCGAGCCGTCCACCCGTCAGAGGCCCGTGGGATTACGGTCTGCTGTGCGGCGTGGGCAACTGTGTGCAGAGAGATGCCAGTCTGGTGCCAGAGGATGATGACGGTCTGCCGCCACTTCTCATTATCACCGGAGAGGAGGAAGAAGGGGATTTATTGGTCGAGGAACGTCCTGCTGCTTgccaaatattgctgctgttggaggAAGGAGGTCCACAACCTCTCACCTTTGTGCTCAATGCCAACTTATTGGTGAACGTCAAGATcgtcacatATTGTGGCAAGAGGTGCTGGTGTCTGAGCTCTAATGGTCTGCAGGGAGTTGGACAGAAGGAGCTGGTGTTTATAATTGAGTGTCTCCCAGAGGAAAACAGCCTGCCTCGAGACGTATTCAACCTGTATGTTAGCATATACCAAGATGCACAAAAAGGGAAGTTCATCGAGCATCTTGGCAATGTGACATTCACGGATAGTTTCTTGGGTAGTAAAGACCACGGGGGCGTCCTGTTCTTCACGGCTACCTTTCAGCCGCTGGAGGGTCTCGCTCTGCCACAGGTCTCCTTCCTCTGTGGAGTTTTGATTCAGAAGTTAGAGGTTCCCTGGGCTAAAGTCTTTCCCCTCCGACTGCTGCTGGCTCTGGGGGCAAAATATAGTGtGTATCCCTGCCCTTTGATGAGCATCCGTTTCCGTGAGTCAGTTTTTAAAGAGACAGGACACACCATCATGAATCTGCTCACAGATCTGAGGAACTACCAGTACAGTTTACCTGTGGTGGAAAGTCTTCGGGTGCACATGGAGATGGGAAACAGCTACATCGAAATTCCCAAATCCAGGTTTAACGAGATGCTGAAGGTGGTGAACTCCTCCAATGAACACGTCATCAGTTTTGGTGCCTGTTTCAGCACTGAGGCCGATTCTCACTTGGTTTGCATTCAGAACGAGGACGGAAGTTACCAGACAAGCGCTAACAGCATACCAGGAAAAACCAGGAGAGTGACTGGAGCTAGTTTTGTGGTTTTTAACGGCGCTCTGAAAGCATCATCAGGATTCATCGCCAAATCCAGCATTGTGGAGGATGGGTTAATGGTGCAGATCCCTCCAGAGACGATGGAGGGTTTGCGACAGGCACTCAGGGACCAGAACGACTTCCAAATCCCCTGTGGAAAGACTGACTCGGAAGAGACACGGGAAAATGTGAATGTGCGCTGGGTCGACTGGACAGCACCTGTCAACGCTGGAGTCACCAGTCCAGTGGACGGCAAGTCTCTGGAGGGAGTGTCCAGCGTGAAGATCCAGCAGGACTCTGAGTTCGAGATGGATGGCCGAACCATCAGGTGTACTGAGGTCTTCTATTTGCTGAAGTCTTCAGACGTGTCCCTGCCTGCCATCCTCACATCATCAGCTCAGTTTCAGAGAGAGATCGCCACCGCCAGCTGTGCCGCCCTCTGCCCGCATCTCTCCGTGCTCATGGCCAATGGATTCAACTCTCTTGCACTCCGAGTCTCCACTGACTCAGACATGGTCGAGTACCAGGCTGGATCTTCTGGCCGCCTCCTGCCTCAGAAATACATGAACGATCTGGACGGGGCTCTAATTCCTGTCATCCACGGAGGAAGCTCCTGTGTACCCCATCAGGCCATGGACATGGAGTTTTTCTTCTACATCTCACTGAGCATTTGA

Function

GO:

id name namespace
GO:0016197 endosomal transport biological_process
GO:0005768 endosome cellular_component
GO:0005769 early endosome cellular_component
GO:0005829 cytosol cellular_component
GO:0031901 early endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0005545 1-phosphatidylinositol binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091116-62 Predicted to enable 1-phosphatidylinositol binding activity and metal ion binding activity. Predicted to be involved in endosomal transport. Predicted to be located in cytosol; endosome; and membrane. Predicted to be active in early endosome membrane. Orthologous to human ZFYVE16 (zinc finger FYVE-type containing 16).

Ensembl:

ensembl_id ENSDART00000111830

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005670 lncRNA upstream 1586 2977535 ~ 2979504 (+) True XLOC_001823
TCONS_00005809 lncRNA upstream 477048 2499533 ~ 2504042 (+) True XLOC_001807
TCONS_00005808 lncRNA upstream 543182 2402308 ~ 2437908 (+) True XLOC_001806
TCONS_00005807 lncRNA upstream 576312 2402308 ~ 2404778 (+) False XLOC_001806
TCONS_00003604 lncRNA upstream 989622 1982550 ~ 1991468 (+) False XLOC_001804
TCONS_00005810 lncRNA downstream 236260 3262578 ~ 3269818 (+) True XLOC_001827
TCONS_00005671 lncRNA downstream 273566 3299884 ~ 3312438 (+) True XLOC_001828
TCONS_00005672 lncRNA downstream 310537 3336855 ~ 3341616 (+) True XLOC_001829
TCONS_00005811 lncRNA downstream 830749 3857067 ~ 3857885 (+) True XLOC_001834
TCONS_00005812 lncRNA downstream 1263387 4289705 ~ 4299850 (+) True XLOC_001839
TCONS_00003630 mRNA upstream 59793 2899108 ~ 2921297 (+) True XLOC_001821
TCONS_00003627 mRNA upstream 82688 2876020 ~ 2898402 (+) False XLOC_001820
TCONS_00003629 mRNA upstream 83343 2876378 ~ 2897747 (+) True XLOC_001820
TCONS_00003626 mRNA upstream 98916 2876020 ~ 2882174 (+) False XLOC_001820
TCONS_00003636 mRNA downstream 23318 3049636 ~ 3106762 (+) False XLOC_001824
TCONS_00003637 mRNA downstream 23318 3049636 ~ 3106762 (+) False XLOC_001824
TCONS_00003635 mRNA downstream 23318 3049636 ~ 3106762 (+) False XLOC_001824
TCONS_00003634 mRNA downstream 23318 3049636 ~ 3106762 (+) True XLOC_001824
TCONS_00003640 mRNA downstream 84686 3111004 ~ 3129887 (+) False XLOC_001825
TCONS_00003616 other upstream 292409 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003605 other upstream 713733 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003597 other upstream 1316052 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003590 other upstream 2175731 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003583 other upstream 2473834 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003646 other downstream 382465 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003658 other downstream 1466959 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003668 other downstream 1959732 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003675 other downstream 2109524 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003679 other downstream 2125031 5151349 ~ 5152401 (+) True XLOC_001855

Expression Profile

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