RNA id: TCONS_00036952


Basic Information

Item Value
RNA id TCONS_00036952
length 1531
lncRNA type antisense_over
GC content 0.41
exon number 5
gene id XLOC_018344
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 43397723 ~ 43411607 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCCGTCATGGATTTGGGTCcgcttgaaacatttccgttttGTTGCGTGGATAATATTTGCCAATGATATTTGCAAGTTGTGGCCAACTTAGTTCCTCACGGCTGCTGGTACATCATCCTGGTCCACTTTTTCAACTTGACCTGAAACAGTGTTGTTGACCTTCCTTTCTTTCAGAAATAGAGCTCGAGTACGGATGCAGAGGAAATATACATGGAGAATGTGATGCGACTGAGAGAAGAACAACCTACAACAGACTCAAGCGTATGGAGAACATCAGAAACTGGACACATATACCACATCCACAGCAGACATCTTTCTTCAGTGATTTTATTTTCAGAGGAAatgcagCGCCCTTTGTCTGACAGGTTGCCCCTTGAGCGACGTCATCTTTACAGCCGGGCTCAgcagagaccacatttggagggTCGTCATGACTACAGCCAGGCTCAgcagagaccacatttggagggGGGTCATCACCGCAGCCGGACTCAGCGGACAGAAAATCTGTAGAGGcgtcatcaccacagccggactCAGCGGACAGAAAATCTGTAGAGGcgtcatcaccacagccggactCAGCAGAGAAGAAGCTGCTGTAGGAGCTGGCTGTGAGCTCAATACTACAGTTGAATCCGGCTGAGTAAATCTCTTGAGGAACATTATCACTACTTCTGGAGGAGCTGGCCGAGTCCTCACTGTGACCATCGACAGACTCTACCAGTGATtgttcttcaccgtgaacactgtcaggctctaccagtgatggttcttcaccgtgaacactgtcaggctctaccagtgatggttcttcaccgtgaacactgtcaggctctaccagtgatggttcttcaccgtgaacactgtcaggctctaccagtgatggatcttcaccgtgaacactgtcagactctaccagtgatggttcttTACTCTGACCATCAACAGGTTCCTCCAGTGATGGTTCCTCAGTCTGAACATTGATCTGTTCCTCCAGATGAAAAGATAATTCTTCACACCAGTCACCGATTTCTTGACCTGAAGGAAGGAATAATGTGAAACAAAAGATTTTAgttttacttaaataatatttatccagagtttattatttatataaacaaattggTCATTAAATTAAAGAGGTCACACAATGAAATTACTGTTCATAATCAAATTCACtttaattaatgatttgttttgtataaaTTCATGTCAATATGAACTTATAGCTGTTATAGTTTGTatcatataacaataaataaaataaccctaAGCTTggcaaaaacaactaaaaactatGAGAAAAGTTTTCATGTTTTCCACTACAAAaaccattaaaacattaaatatcagCAATTGTTATCCATTAAAACCACTGCATTGTGTTTTAGGACATATTCCTGAAGGATTTAATGGTTTAGGATTACAAATTACAAGCAGAGACAAGGGATCAAACAGGGGTGTCGAACTAAAATCACTAAAATTTTGtgggttttaatattttatttgttgatttttgtatggcag

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0001707 mesoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0035775 pronephric glomerulus morphogenesis biological_process
GO:0007498 mesoderm development biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0072102 glomerulus morphogenesis biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0001756 somitogenesis biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0048513 animal organ development biological_process
GO:0035282 segmentation biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0021915 neural tube development biological_process
GO:0033504 floor plate development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:2000826 regulation of heart morphogenesis biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0003007 heart morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0061311 cell surface receptor signaling pathway involved in heart development biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0039021 pronephric glomerulus development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0021999 neural plate anterior/posterior regionalization biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036102 lncRNA downstream 8403 43345882 ~ 43389320 (-) False XLOC_018343
TCONS_00036103 lncRNA downstream 10556 43353091 ~ 43387167 (-) True XLOC_018343
TCONS_00036098 lncRNA downstream 356418 43039061 ~ 43041305 (-) True XLOC_018341
TCONS_00036097 lncRNA downstream 360651 43036516 ~ 43037072 (-) False XLOC_018341
TCONS_00036497 lncRNA downstream 545393 42849227 ~ 42852330 (-) True XLOC_018338
TCONS_00036119 lncRNA upstream 330763 43742370 ~ 43743680 (-) True XLOC_018354
TCONS_00036127 lncRNA upstream 364797 43776404 ~ 43780496 (-) True XLOC_018357
TCONS_00036130 lncRNA upstream 427294 43838901 ~ 43917689 (-) True XLOC_018358
TCONS_00036954 lncRNA upstream 681296 44092903 ~ 44095025 (-) True XLOC_018360
TCONS_00036498 lncRNA upstream 712196 44123803 ~ 44275962 (-) False XLOC_018361
TCONS_00036101 mRNA downstream 44626 43122976 ~ 43353097 (-) False XLOC_018343
TCONS_00036100 mRNA downstream 51674 43120132 ~ 43346049 (-) False XLOC_018343
TCONS_00036095 mRNA downstream 318245 43016437 ~ 43079478 (-) False XLOC_018341
TCONS_00036094 mRNA downstream 425124 42968785 ~ 42972599 (-) True XLOC_018340
TCONS_00036092 mRNA downstream 647452 42748295 ~ 42750271 (-) True XLOC_018334
TCONS_00036106 mRNA upstream 20485 43432092 ~ 43436896 (-) True XLOC_018346
TCONS_00036107 mRNA upstream 45818 43457425 ~ 43459761 (-) False XLOC_018347
TCONS_00036108 mRNA upstream 45904 43457511 ~ 43462190 (-) True XLOC_018347
TCONS_00036109 mRNA upstream 79919 43491526 ~ 43495506 (-) False XLOC_018348
TCONS_00036110 mRNA upstream 79943 43491550 ~ 43493963 (-) True XLOC_018348
TCONS_00036099 other downstream 314656 43082949 ~ 43083067 (-) True XLOC_018342
TCONS_00036096 other downstream 318242 43016437 ~ 43079481 (-) False XLOC_018341
TCONS_00036093 other downstream 430335 42967274 ~ 42967388 (-) True XLOC_018339
TCONS_00036086 other downstream 992511 42405098 ~ 42405212 (-) True XLOC_018330
TCONS_00036072 other downstream 2044763 41352846 ~ 41352960 (-) True XLOC_018324
TCONS_00036136 other upstream 937335 44348942 ~ 44349057 (-) True XLOC_018363
TCONS_00036148 other upstream 1500606 44912213 ~ 44912331 (-) True XLOC_018369
TCONS_00036178 other upstream 2771580 46183187 ~ 46249185 (-) True XLOC_018394
TCONS_00036182 other upstream 3038871 46450478 ~ 46457256 (-) True XLOC_018396
TCONS_00036189 other upstream 3325075 46736682 ~ 46738314 (-) False XLOC_018401

Expression Profile

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