Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00003633 |
| length | 660 |
| RNA type | processed_transcript |
| GC content | 0.51 |
| exon number | 4 |
| gene id | XLOC_001822 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007121.7 |
| NCBI id | CM002894.2 |
| chromosome length | 45420867 |
| location | 2975974 ~ 3026523 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016197 | endosomal transport | biological_process |
| GO:0005768 | endosome | cellular_component |
| GO:0005769 | early endosome | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0031901 | early endosome membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0005545 | 1-phosphatidylinositol binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-091116-62 | Predicted to enable 1-phosphatidylinositol binding activity and metal ion binding activity. Predicted to be involved in endosomal transport. Predicted to be located in cytosol; endosome; and membrane. Predicted to be active in early endosome membrane. Orthologous to human ZFYVE16 (zinc finger FYVE-type containing 16). |
| ensembl_id | ENSDART00000138819 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00005670 | lncRNA | upstream | 5540 | 2977535 ~ 2979504 (+) | True | XLOC_001823 |
| TCONS_00005809 | lncRNA | upstream | 481002 | 2499533 ~ 2504042 (+) | True | XLOC_001807 |
| TCONS_00005808 | lncRNA | upstream | 547136 | 2402308 ~ 2437908 (+) | True | XLOC_001806 |
| TCONS_00005807 | lncRNA | upstream | 580266 | 2402308 ~ 2404778 (+) | False | XLOC_001806 |
| TCONS_00003604 | lncRNA | upstream | 993576 | 1982550 ~ 1991468 (+) | False | XLOC_001804 |
| TCONS_00005810 | lncRNA | downstream | 236055 | 3262578 ~ 3269818 (+) | True | XLOC_001827 |
| TCONS_00005671 | lncRNA | downstream | 273361 | 3299884 ~ 3312438 (+) | True | XLOC_001828 |
| TCONS_00005672 | lncRNA | downstream | 310332 | 3336855 ~ 3341616 (+) | True | XLOC_001829 |
| TCONS_00005811 | lncRNA | downstream | 830544 | 3857067 ~ 3857885 (+) | True | XLOC_001834 |
| TCONS_00005812 | lncRNA | downstream | 1263182 | 4289705 ~ 4299850 (+) | True | XLOC_001839 |
| TCONS_00003630 | mRNA | upstream | 63747 | 2899108 ~ 2921297 (+) | True | XLOC_001821 |
| TCONS_00003627 | mRNA | upstream | 86642 | 2876020 ~ 2898402 (+) | False | XLOC_001820 |
| TCONS_00003629 | mRNA | upstream | 87297 | 2876378 ~ 2897747 (+) | True | XLOC_001820 |
| TCONS_00003626 | mRNA | upstream | 102870 | 2876020 ~ 2882174 (+) | False | XLOC_001820 |
| TCONS_00003628 | mRNA | upstream | 104766 | 2876054 ~ 2880278 (+) | False | XLOC_001820 |
| TCONS_00003636 | mRNA | downstream | 23113 | 3049636 ~ 3106762 (+) | False | XLOC_001824 |
| TCONS_00003637 | mRNA | downstream | 23113 | 3049636 ~ 3106762 (+) | False | XLOC_001824 |
| TCONS_00003635 | mRNA | downstream | 23113 | 3049636 ~ 3106762 (+) | False | XLOC_001824 |
| TCONS_00003634 | mRNA | downstream | 23113 | 3049636 ~ 3106762 (+) | True | XLOC_001824 |
| TCONS_00003640 | mRNA | downstream | 84481 | 3111004 ~ 3129887 (+) | False | XLOC_001825 |
| TCONS_00003616 | other | upstream | 296363 | 2688565 ~ 2688681 (+) | True | XLOC_001815 |
| TCONS_00003605 | other | upstream | 717687 | 2175583 ~ 2267357 (+) | False | XLOC_001805 |
| TCONS_00003597 | other | upstream | 1320006 | 1664922 ~ 1665038 (+) | True | XLOC_001797 |
| TCONS_00003590 | other | upstream | 2179685 | 805244 ~ 805359 (+) | True | XLOC_001790 |
| TCONS_00003583 | other | upstream | 2477788 | 506563 ~ 507256 (+) | True | XLOC_001784 |
| TCONS_00003646 | other | downstream | 382260 | 3408783 ~ 3408900 (+) | True | XLOC_001830 |
| TCONS_00003658 | other | downstream | 1466754 | 4493277 ~ 4493358 (+) | True | XLOC_001842 |
| TCONS_00003668 | other | downstream | 1959527 | 4986050 ~ 4987483 (+) | True | XLOC_001850 |
| TCONS_00003675 | other | downstream | 2109319 | 5135842 ~ 5147582 (+) | True | XLOC_001854 |
| TCONS_00003679 | other | downstream | 2124826 | 5151349 ~ 5152401 (+) | True | XLOC_001855 |
