RNA id: TCONS_00005670


Basic Information

Item Value
RNA id TCONS_00005670
length 296
lncRNA type intronic
GC content 0.41
exon number 3
gene id XLOC_001823
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 2977535 ~ 2979504 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

accGCATCTTTAGGACCCTAGTTTTTTGTGACAGCGTTACCTGTCGGATTGGATCATGGATGCGCTAATGGACGACACGGATGACAAGGAAAGTgccATCGTACATCCTCTGGGTGTCTTGAGGAGCTGGTCTTTGGATGATGCTGAGCAGGTCTTTCTTTCTGGTAAAGATTATCATTACAGgaGCTAAAGTCTACAGCCAGTCTGAATGCAGCAACTGAATAAACAGTGGAGTCATTTTTGtggttgaattgcattaataaaaataaaagtgtggatatttatataaatgtaca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005809 lncRNA upstream 473493 2499533 ~ 2504042 (+) True XLOC_001807
TCONS_00005808 lncRNA upstream 539627 2402308 ~ 2437908 (+) True XLOC_001806
TCONS_00005807 lncRNA upstream 572757 2402308 ~ 2404778 (+) False XLOC_001806
TCONS_00003604 lncRNA upstream 986067 1982550 ~ 1991468 (+) False XLOC_001804
TCONS_00003603 lncRNA upstream 986067 1982550 ~ 1991468 (+) True XLOC_001804
TCONS_00005810 lncRNA downstream 283074 3262578 ~ 3269818 (+) True XLOC_001827
TCONS_00005671 lncRNA downstream 320380 3299884 ~ 3312438 (+) True XLOC_001828
TCONS_00005672 lncRNA downstream 357351 3336855 ~ 3341616 (+) True XLOC_001829
TCONS_00005811 lncRNA downstream 877563 3857067 ~ 3857885 (+) True XLOC_001834
TCONS_00005812 lncRNA downstream 1310201 4289705 ~ 4299850 (+) True XLOC_001839
TCONS_00003630 mRNA upstream 56238 2899108 ~ 2921297 (+) True XLOC_001821
TCONS_00003627 mRNA upstream 79133 2876020 ~ 2898402 (+) False XLOC_001820
TCONS_00003629 mRNA upstream 79788 2876378 ~ 2897747 (+) True XLOC_001820
TCONS_00003626 mRNA upstream 95361 2876020 ~ 2882174 (+) False XLOC_001820
TCONS_00003628 mRNA upstream 97257 2876054 ~ 2880278 (+) False XLOC_001820
TCONS_00003632 mRNA downstream 1586 2981090 ~ 3026318 (+) False XLOC_001822
TCONS_00003636 mRNA downstream 70132 3049636 ~ 3106762 (+) False XLOC_001824
TCONS_00003637 mRNA downstream 70132 3049636 ~ 3106762 (+) False XLOC_001824
TCONS_00003635 mRNA downstream 70132 3049636 ~ 3106762 (+) False XLOC_001824
TCONS_00003634 mRNA downstream 70132 3049636 ~ 3106762 (+) True XLOC_001824
TCONS_00003616 other upstream 288854 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003605 other upstream 710178 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003597 other upstream 1312497 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003590 other upstream 2172176 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003583 other upstream 2470279 506563 ~ 507256 (+) True XLOC_001784
TCONS_00003633 other downstream 5540 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003646 other downstream 429279 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003658 other downstream 1513773 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003668 other downstream 2006546 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003675 other downstream 2156338 5135842 ~ 5147582 (+) True XLOC_001854