RNA id: TCONS_00003636


Basic Information

Item Value
RNA id TCONS_00003636
length 3477
RNA type mRNA
GC content 0.51
exon number 26
gene id XLOC_001824
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 3049636 ~ 3106762 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCAGAAGAGCGTGCGTTATAATGAAGGACACGCGCTCTATCTGTCCATGGTCGCGCGTAAAGAGGGAATCAAGCGCGGGCACCTGAGCAAAAAAGCCGCCGAGAACAACCGCTGGAACGAGAAGTACTTCGCGCTTTACCAGAATGTGCTGTTTTACTTTGAGAACGAGCAGAGCACCAGACCCTCTGGGATTTATTTGCTGGAGGGAAGCACCTGCGAGAGGATTCCGGCTCCGAAAGTGTCCACCGTGGGGAAGGAGAGTTCAGATAAACAGCAGCATTACTTCTTGGTGATTTTCGGCCACGATGGGCAGAAACCTCTGGAGCTGCGGTCAGAAGAAGAAGCTGATTGTAATGAGTGGGTGGAGGTCATTCAGCAGGCCAGTTATTCAGATCTGATCATCGAGCGGGAAGTTCTCATGCAGAAATACATCCATCTGGTGCAGATCATGGAGACGGAAAAGGTGGCGGCAAATCAGCTCCGGACTCAACTGGAGGACCAGGATACAGAGATCGAGAGGCTGAAGGCCGAGATTGTTGTTCTGAACAAATCAAAAGAGCGGATGTTGCCCTTTCAGTCCTTTCAAGACGAAGAAGATCCAGACATCAAAAAAATCAAGATGGTGCAGAGCTTCATGCGTGGCTGGCTCTGCAGGAGGAAGTGGAAGATCATCGTGCAGGACTACATCTGCTCGCCTCACGCCGAGAGCATGAGGAAGAGGAACCAGATCGTCTTTAACATGGTGGAGGCCGAGACGGAGTACGTGCTCCAGCTCTCCATCCTGGTCAACTGCTTCCTCCGGCCGCTCCGGATGGCGGCCAGCTCCAAAAAACCTCCCATCAGTCACGACGATGTCAGCAGCATCTTCCTCAATAGtGAGACGATAATGTTTCTCCATGAGATATTTCACCAAGGCTTGAAGGCTCGGATAGCCAACTGGCCGACGTTAGTTTTAGCGGATCTCTTCGACATCTTGCTGCCAATGCTGAACATTTATCAGGAGTTTGTGCGAAACCATCAGTACAGTTTGCAGGTTCTGGCCAACTGTAAACAGAACCGAGACTTCGACAAGCTTCTGAAGCAGTATGAAGCAAACGCCGCCTGTGAGGGCCGGATGCTGGAGACCTTTCTCACATACCCCATGTTTCAGATCCCACGATACATCATCACGCTCCATGAGCTGCTCGCTCACACGCCTCATGAACATGTGGAGCGCAAGAGTCTGGAATTTGCCAAATCCAAACTAGAAGAACTGTCCAAAATGATGCACGATGAAGTGAGTGACACAGAAAACATCCGTAAGAATCTAGCGATCGAGCGAATGATTGTGGAGGGCTGTGATATCCTGCTGGACACCAGTCAGACGTTTGTAAGGCAGGGTGAGACACACGATCAGAGCATTACATTTACAACTCATTttcttcatgcttgttttgttgttttacaacATTGCTACACCAACATTTTACATGATGCCAGAAGTTACAGAGTgatatttgatttctgtttagatAATGCCGCTGGTCAGGGTCTCAATCATCTCGAGTTTAAGATCGTGGTTGAACCTGCTGATGGTTCCTCGTTTTCAGTGGTTCTTCTCGCTCCATCTCGACAGGAAAAAGCAGCCTGGACCAGCGACATCAGCCAGTGCATTGACAACATTCGCTGCAACGGCTTGATGAACAGCGTGTTTGAGGACAACTCGAAAGTCACCGTGCCTCACATGATCAAGTCTGACGCCCGACTGCACAAAGACGATGTGGACATCTGCTTCAGCAAGACGCTCAACTCCTGCAAGGTGCCACAGATCCGCTACGCCAGCGTGGAGAGACTGCTGGAAAGACTGACCGACCTGCGCTTTCTGTCCATCGACTTCCTCAACACTTTCCTCCACACATACCGCATCTTCACCACTGCCGCAGTAGTGATGGACAAACTGGCCGACATCTACAAGAAACCCTTCACGTCTATACCTGTCAGGTCCCTGGAGCTTTTCTTCGCCACCAACCAGGGCCCCTGGAGCGGAGAGCATCTCAACAACAAATCCCCCCGGCTGTCCCGCAAGTTCTCCTCACCTCCGCCCATCTCCATCACCTCGCGCACCTCCTCCCCCATCCACTCCCGCAAGCTGTCCCTCAGCTCTCCTGTCAGCTGTAAGGCTGGAGCTCTGGATCTCTCCACCTCCACCTTCTCTGCAGCCAGCAGTCCAACATCTCCATATAACCCCATCATCTGCTCTCCTCCGCCCACCTCTGTACTTGAGTCAGTATCACTGGACAATGACTCTGGAGAAATGTCTCCAAGCCGTTCCCCATCCACCCCGAGACACCTTCGCTACCGACAGCCCGCAGGTCAGTGTCCTGATAACTCCCGCTGTGCCGTGTCCCCCGCGTCCGCCTTCGCCATTGCCACCGCCGCAGCCGGACACAGCAGCCCGCAAGGATTTACCAACCCAGAGAAATCCTACGACAAAGAGTTCCTCATCCGCAGGGCGGCCACCAACAGAGTGCTCAACGTCCTGCGCCACTGGGTTTCTAAACACTCGCAGGACTTTGAGATGAACGCAGAGCTGACGACTGCTGTGATGGCTCTGCTGGAGGAGGTGCTGAGAGATCCAGATCTTCTGCCGCAGGAGAGAAAAGCTGCAGTCAATATACTGAGTGCGCTTTCTCAGGAAGAACAAGACGATTCACAATTGAAGATTGAGGATATCGTCCAAATGGTGGACTGTCCGAGGGCCGAATGCTTTGAGTCACTATCTGCAATGGAGCTAGCAGAACAAATCACCCTGCTGGACCATATTGTGTTCCGGAATATTCCCTATGAGGAGTTTCTTGGTCAAGGCTGGATGAAGATGGACAAAAATGAAAGAACTCCATACATTATGAAGACCAGTCAGCACTTCAATGATATGAGTAATCTGGTAGCTTCTGAGATTATGGCTCATGCAGATGTGAGCTCCAGGGCTGGATCCATTGACAAGTGGCTGGCAGTGGCTGATATCTGCCGCTGTCTCAACAACTACAACGGAGTCTTGGAAATCACATCTGCACTGAACCGCAGCGCCATCTACAGGCTGAAGAAGACATGGGCCAAGGTTTGCAAACAGaccaAGGCATTAATGGATAGGCTGCAGAAGATCGTGTCGTCTGAAGGGAGGTTTAAGAACCTGAGGGAAACTCTGAAGAACTGTAACCCACCGTGTGTGCCCTATCTGGGCATGTACCTGACAGATTTGGCATTTATCGAGGAAGGAACACCCAATTTCACGGAGGAGGGTCTCGTCAACTTCTCTAAAATGAGGATGATTTCACACATAATACGAGAGATTCGACAGTTTCAGCAGGCGCCCTATAGGATTGAACTGCAACCTAAGGTGACACAGTTCCTCCTGGATAAGACCCTTGTAATGGACGAGGACACGCTTTATGAACTATCTCTGAAGATCGAGCCAAGACTTCCACCTGCCAACTAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-111128-1 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human RASGRF2 (Ras protein specific guanine nucleotide releasing factor 2).

Ensembl:

ensembl_id ENSDART00000183514

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005670 lncRNA upstream 70132 2977535 ~ 2979504 (+) True XLOC_001823
TCONS_00005809 lncRNA upstream 545594 2499533 ~ 2504042 (+) True XLOC_001807
TCONS_00005808 lncRNA upstream 611728 2402308 ~ 2437908 (+) True XLOC_001806
TCONS_00005807 lncRNA upstream 644858 2402308 ~ 2404778 (+) False XLOC_001806
TCONS_00003603 lncRNA upstream 1058168 1982550 ~ 1991468 (+) True XLOC_001804
TCONS_00005810 lncRNA downstream 155816 3262578 ~ 3269818 (+) True XLOC_001827
TCONS_00005671 lncRNA downstream 193122 3299884 ~ 3312438 (+) True XLOC_001828
TCONS_00005672 lncRNA downstream 230093 3336855 ~ 3341616 (+) True XLOC_001829
TCONS_00005811 lncRNA downstream 750305 3857067 ~ 3857885 (+) True XLOC_001834
TCONS_00005812 lncRNA downstream 1182943 4289705 ~ 4299850 (+) True XLOC_001839
TCONS_00003631 mRNA upstream 23116 2975974 ~ 3026520 (+) False XLOC_001822
TCONS_00003632 mRNA upstream 23318 2981090 ~ 3026318 (+) False XLOC_001822
TCONS_00003630 mRNA upstream 128339 2899108 ~ 2921297 (+) True XLOC_001821
TCONS_00003627 mRNA upstream 151234 2876020 ~ 2898402 (+) False XLOC_001820
TCONS_00003629 mRNA upstream 151889 2876378 ~ 2897747 (+) True XLOC_001820
TCONS_00003640 mRNA downstream 4242 3111004 ~ 3129887 (+) False XLOC_001825
TCONS_00003639 mRNA downstream 4242 3111004 ~ 3129887 (+) False XLOC_001825
TCONS_00003638 mRNA downstream 4242 3111004 ~ 3129887 (+) False XLOC_001825
TCONS_00003641 mRNA downstream 21047 3127809 ~ 3129887 (+) True XLOC_001825
TCONS_00003642 mRNA downstream 38945 3145707 ~ 3155957 (+) False XLOC_001826
TCONS_00003633 other upstream 23113 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003616 other upstream 360955 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003605 other upstream 782279 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003597 other upstream 1384598 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003590 other upstream 2244277 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003646 other downstream 302021 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003658 other downstream 1386515 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003668 other downstream 1879288 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003675 other downstream 2029080 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003679 other downstream 2044587 5151349 ~ 5152401 (+) True XLOC_001855

Expression Profile

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