RNA id: TCONS_00036954


Basic Information

Item Value
RNA id TCONS_00036954
length 230
lncRNA type antisense_over
GC content 0.54
exon number 2
gene id XLOC_018360
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 44092903 ~ 44095025 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGGCGGAGCTGTGTGTTTCGTGTGAACGCAGTGAGTCAGTGAGCGTGATGGGGCTTTGTCACATGTTTGGGAGGCATCTCTTCTTCGCACACTCAACTGTCAGTCGGCTCTCCTCACATCACCTCAGGGTGAGCAGAGACAAGCAGCCCACGTCCACCAGCTGGAGAAAGATGGAGAGCTACAAAGAGCACAGGAGGGAAAGAAGAGCCcacatacggttgaagtcaga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036130 lncRNA downstream 175214 43838901 ~ 43917689 (-) True XLOC_018358
TCONS_00036127 lncRNA downstream 312407 43776404 ~ 43780496 (-) True XLOC_018357
TCONS_00036119 lncRNA downstream 349223 43742370 ~ 43743680 (-) True XLOC_018354
TCONS_00036952 lncRNA downstream 681296 43397723 ~ 43411607 (-) False XLOC_018344
TCONS_00036498 lncRNA upstream 28778 44123803 ~ 44275962 (-) False XLOC_018361
TCONS_00036955 lncRNA upstream 62315 44157340 ~ 44171840 (-) False XLOC_018361
TCONS_00036958 lncRNA upstream 62315 44157340 ~ 44275988 (-) False XLOC_018361
TCONS_00036959 lncRNA upstream 62315 44157340 ~ 44275988 (-) False XLOC_018361
TCONS_00036957 lncRNA upstream 62315 44157340 ~ 44275988 (-) False XLOC_018361
TCONS_00036135 mRNA downstream 2243 43996248 ~ 44090660 (-) True XLOC_018359
TCONS_00036134 mRNA downstream 2255 43996248 ~ 44090648 (-) False XLOC_018359
TCONS_00036132 mRNA downstream 2279 43996041 ~ 44090624 (-) False XLOC_018359
TCONS_00036133 mRNA downstream 37780 43996248 ~ 44055123 (-) False XLOC_018359
TCONS_00036131 mRNA downstream 37808 43994848 ~ 44055095 (-) False XLOC_018359
TCONS_00036137 mRNA upstream 277720 44372745 ~ 44460789 (-) True XLOC_018364
TCONS_00036138 mRNA upstream 369320 44464345 ~ 44496245 (-) True XLOC_018365
TCONS_00036139 mRNA upstream 412642 44507667 ~ 44543639 (-) False XLOC_018366
TCONS_00036140 mRNA upstream 414251 44509276 ~ 44557037 (-) True XLOC_018366
TCONS_00036141 mRNA upstream 471914 44566939 ~ 44576949 (-) False XLOC_018367
TCONS_00036099 other downstream 1009836 43082949 ~ 43083067 (-) True XLOC_018342
TCONS_00036096 other downstream 1013422 43016437 ~ 43079481 (-) False XLOC_018341
TCONS_00036093 other downstream 1125515 42967274 ~ 42967388 (-) True XLOC_018339
TCONS_00036086 other downstream 1687691 42405098 ~ 42405212 (-) True XLOC_018330
TCONS_00036072 other downstream 2739943 41352846 ~ 41352960 (-) True XLOC_018324
TCONS_00036136 other upstream 253917 44348942 ~ 44349057 (-) True XLOC_018363
TCONS_00036148 other upstream 817188 44912213 ~ 44912331 (-) True XLOC_018369
TCONS_00036178 other upstream 2088162 46183187 ~ 46249185 (-) True XLOC_018394
TCONS_00036182 other upstream 2355453 46450478 ~ 46457256 (-) True XLOC_018396
TCONS_00036189 other upstream 2641657 46736682 ~ 46738314 (-) False XLOC_018401

Expression Profile

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