RNA id: TCONS_00036955



Basic Information


Item Value
RNA id TCONS_00036955
length 1144
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id XLOC_018361
representative False

Chromosome Information


Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 44123803 ~ 44275988 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


AGTAGCCCGTGTGAGTGCGCCGGTGTTGGACTGATCTATGGCCTGTGCGCTGGCTGGATTTGTTTAACCCTGAATGTCAACCGGTGCTGTCTGGAGCATGTGTGCAGATTTTTCCCTGCAGATGTTGTCTGGGCCTGCAGATCTCCAAGTTGGCTTATCCTGCAAACCAAAGGCTGCTGTATCATCTGATCCGTTTCATCCTTATGACAAACACAAAGGAGACTCGCTCTTTGAAGAGACGCTGTTGTGTCTGTCTGATGAGGTAATAATGAGGGTCTTATGCTGTTGATATATTAACACAAGTTGGTTCCTGCACGCGTCGGCTTGTTTCTGCCAATTCTCAAAGCAGCCGATGTTGTGACGGGGTTATGAGTTCTCTATGAAGCTGATCTCCCATGTAGATTGCGTTTAATATCCTCATATAGATGATGGATTTTGTAGACAtctactattattgttgtttactttgaattattattttcgaTGTCACCTGAACATGATGCTAATGATCCGTTTTGGCATGCTTAGCTATgttatttgtattaaaatgtaatatcgGGTGATGTTCTGATGCATCAGACGTGAGGAATGTTGACGAAGCCCATGGGCTAATTTGACAGACTAATTTGCCACAGCAAAAACACATACTCAGACATTAAAGCTTGGAAGAGCTTCATTCAGTGCAGCAGGCAAACGTCTCGGCATGCCCAGCTGTGATTCTGTGAGAAGTACATAGACGAAAACAGTTCCCTGTGAAAAACATTAGCACCCAcctatttttaaagtgtattatagaatattgcatacacacacacacattctataTGGAAATGCTAACCCATGTGAAAATATACaatagatatttatattaaatactgtagtgtttttgaacaaaaaaataataatacatgcaCAAAAGCATCAAGCAATTTCATGTGGCATTTAAAGCTTAGGAAAAGGAATCAATCATTGACTTTGGAATGCAAAATGAGCATGACATGAATCTCTTACGAATGACAGTTTTAACTACTTAATTCTGTAGATACCTAATataaacaagaaataaataaaatcattaggCTGGCTGCTGATAAATACATGTGAGGGCATTGTTTAATATACAGCACCATaaatcaagtcaagt

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00036954 lncRNA downstream 62315 44092903 ~ 44095025 (-) True XLOC_018360
TCONS_00036130 lncRNA downstream 239651 43838901 ~ 43917689 (-) True XLOC_018358
TCONS_00036127 lncRNA downstream 376844 43776404 ~ 43780496 (-) True XLOC_018357
TCONS_00036119 lncRNA downstream 413660 43742370 ~ 43743680 (-) True XLOC_018354
TCONS_00036105 lncRNA downstream 749835 43406707 ~ 43407505 (-) True XLOC_018345
TCONS_00036960 lncRNA upstream 6999 44178839 ~ 44275988 (-) False XLOC_018361
TCONS_00036961 lncRNA upstream 11765 44183605 ~ 44275988 (-) False XLOC_018361
TCONS_00036962 lncRNA upstream 77799 44249639 ~ 44266220 (-) False XLOC_018361
TCONS_00036963 lncRNA upstream 77799 44249639 ~ 44275988 (-) False XLOC_018361
TCONS_00036500 lncRNA upstream 103528 44275368 ~ 44275962 (-) True XLOC_018361
TCONS_00036135 mRNA downstream 66680 43996248 ~ 44090660 (-) True XLOC_018359
TCONS_00036134 mRNA downstream 66692 43996248 ~ 44090648 (-) False XLOC_018359
TCONS_00036132 mRNA downstream 66716 43996041 ~ 44090624 (-) False XLOC_018359
TCONS_00036133 mRNA downstream 102217 43996248 ~ 44055123 (-) False XLOC_018359
TCONS_00036131 mRNA downstream 102245 43994848 ~ 44055095 (-) False XLOC_018359
TCONS_00036137 mRNA upstream 200905 44372745 ~ 44460789 (-) True XLOC_018364
TCONS_00036138 mRNA upstream 292505 44464345 ~ 44496245 (-) True XLOC_018365
TCONS_00036139 mRNA upstream 335827 44507667 ~ 44543639 (-) False XLOC_018366
TCONS_00036140 mRNA upstream 337436 44509276 ~ 44557037 (-) True XLOC_018366
TCONS_00036141 mRNA upstream 395099 44566939 ~ 44576949 (-) False XLOC_018367
TCONS_00036099 other downstream 1074273 43082949 ~ 43083067 (-) True XLOC_018342
TCONS_00036096 other downstream 1077859 43016437 ~ 43079481 (-) False XLOC_018341
TCONS_00036093 other downstream 1189952 42967274 ~ 42967388 (-) True XLOC_018339
TCONS_00036086 other downstream 1752128 42405098 ~ 42405212 (-) True XLOC_018330
TCONS_00036072 other downstream 2804380 41352846 ~ 41352960 (-) True XLOC_018324
TCONS_00036136 other upstream 177102 44348942 ~ 44349057 (-) True XLOC_018363
TCONS_00036148 other upstream 740373 44912213 ~ 44912331 (-) True XLOC_018369
TCONS_00036178 other upstream 2011347 46183187 ~ 46249185 (-) True XLOC_018394
TCONS_00036182 other upstream 2278638 46450478 ~ 46457256 (-) True XLOC_018396
TCONS_00036189 other upstream 2564842 46736682 ~ 46738314 (-) False XLOC_018401

Expression Profile


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