RNA id: TCONS_00036962


Basic Information

Item Value
RNA id TCONS_00036962
length 923
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id XLOC_018361
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 44123803 ~ 44275988 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACAGGTCAAAACAGAAAAGCCTCACAGTAATCCCTCTTCACACATAGAATGGAAGACCTACAGGAATGCATTCACCCGTGTGCTGACTTGAGCTTGCATTGGAATTGTAGAGAGCCATCCTGTTGATTAGGATTACAACTGCCATCGGTGTGACAACGTGACAGTTCAGCATCCAAACGGTCCTCCTCGTATCATAAAGCACCTGGTAGATTCCCGGAGCTCCGCTTTTAGCAATCAAATTATGTTGCAAACTTATCTTGCCCTGTTGCATATTGCAGAAGATATGAAACTCAATGTCATGCGAgtgcatttaacactaaatattGCATTAGGGGGCTAGAAATCTAATGTTGACTTGCGCTTGCATAAAATAGTCAAGCGTGCTGAGTTCTAATAACAGAAAGCTGTTCCCGCAGTCTATTTGATGAGGTATGCATACTGAATTTATAATTGATTCGCAGCTCACCGCCATTTgcatttttcattattaaaatctaGAGCTTCTCATAAAAAGTATGATACTGGAAGGCATACTGTATGATTGTTTAACGCAAAGCCaaggcaaacttttttttatatagcacAATTTCATCCAACTGTAGTTTATCCAAGGGGCTTTACcataataaagataaaataaaaatagaataaaatttcAAAGCATCTAGATGTGCAAACCTATTAAAGATCAGATAATAaaggggttagttcacacaaaaataaaaattctgttatcGTTGATCCTCATGGACATTTACTTAAAGAGAAGTTGCTtcaaaatgtcaatattgcagTAGCACTTTAAACTGTTAAACATATAATTTTGCCCTGCTTTACGTAAATGGTATTAGATAGCGATTTTAATTTGGAGAGACttaaacagaataatttttaaaatgtgaatccTGATATAATTTGCATC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036499 lncRNA downstream 30043 44157740 ~ 44219596 (-) False XLOC_018361
TCONS_00036955 lncRNA downstream 77799 44157340 ~ 44171840 (-) False XLOC_018361
TCONS_00036954 lncRNA downstream 154614 44092903 ~ 44095025 (-) True XLOC_018360
TCONS_00036130 lncRNA downstream 331950 43838901 ~ 43917689 (-) True XLOC_018358
TCONS_00036127 lncRNA downstream 469143 43776404 ~ 43780496 (-) True XLOC_018357
TCONS_00036500 lncRNA upstream 9148 44275368 ~ 44275962 (-) True XLOC_018361
TCONS_00036964 lncRNA upstream 79767 44345987 ~ 44361358 (-) False XLOC_018362
TCONS_00036965 lncRNA upstream 80529 44346749 ~ 44347522 (-) False XLOC_018362
TCONS_00036966 lncRNA upstream 83834 44350054 ~ 44361396 (-) False XLOC_018362
TCONS_00036501 lncRNA upstream 85914 44352134 ~ 44361231 (-) True XLOC_018362
TCONS_00036135 mRNA downstream 158979 43996248 ~ 44090660 (-) True XLOC_018359
TCONS_00036134 mRNA downstream 158991 43996248 ~ 44090648 (-) False XLOC_018359
TCONS_00036132 mRNA downstream 159015 43996041 ~ 44090624 (-) False XLOC_018359
TCONS_00036133 mRNA downstream 194516 43996248 ~ 44055123 (-) False XLOC_018359
TCONS_00036131 mRNA downstream 194544 43994848 ~ 44055095 (-) False XLOC_018359
TCONS_00036137 mRNA upstream 106525 44372745 ~ 44460789 (-) True XLOC_018364
TCONS_00036138 mRNA upstream 198125 44464345 ~ 44496245 (-) True XLOC_018365
TCONS_00036139 mRNA upstream 241447 44507667 ~ 44543639 (-) False XLOC_018366
TCONS_00036140 mRNA upstream 243056 44509276 ~ 44557037 (-) True XLOC_018366
TCONS_00036141 mRNA upstream 300719 44566939 ~ 44576949 (-) False XLOC_018367
TCONS_00036099 other downstream 1166572 43082949 ~ 43083067 (-) True XLOC_018342
TCONS_00036096 other downstream 1170158 43016437 ~ 43079481 (-) False XLOC_018341
TCONS_00036093 other downstream 1282251 42967274 ~ 42967388 (-) True XLOC_018339
TCONS_00036086 other downstream 1844427 42405098 ~ 42405212 (-) True XLOC_018330
TCONS_00036072 other downstream 2896679 41352846 ~ 41352960 (-) True XLOC_018324
TCONS_00036136 other upstream 82722 44348942 ~ 44349057 (-) True XLOC_018363
TCONS_00036148 other upstream 645993 44912213 ~ 44912331 (-) True XLOC_018369
TCONS_00036178 other upstream 1916967 46183187 ~ 46249185 (-) True XLOC_018394
TCONS_00036182 other upstream 2184258 46450478 ~ 46457256 (-) True XLOC_018396
TCONS_00036189 other upstream 2470462 46736682 ~ 46738314 (-) False XLOC_018401

Expression Profile

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