RNA id: TCONS_00036502


Basic Information

Item Value
RNA id TCONS_00036502
length 861
lncRNA type sense_over
GC content 0.39
exon number 2
gene id XLOC_018365
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 44464345 ~ 44496245 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGATGCTGCAGAATGGAAAGAAGTTTGACTCGTCACGAGACAGAAACAAGCCATTCAAGTTCAAGATCGGCCGACAAGAAGTCATCAAGGGCTGGGAGGAAGGAGTCGCACAAATGAGTTTGGGTCAGCGGGCGAAGATCACCTGCACCCCAGATATGGCGTACGGGGCCACAGGACACCCTGGTGTCATTCCTCCCAATGCCACGCTTATATTTGACGTAGAGCTGCTGAAATTGGAGTGAACCACTAGCTTTTACAGGGCTGAAGTCTTCAAATGGAGGAGGAGGAGATACACTAGTCTCGCCCCATCAACAAAACCTCCTTCGACATCATTTTTCTTGTTTTCTTACCTACAAATGTAACGTGTAGAGGGCGTTTAATTCTTTTCTACGCATGATGACTTTAACTATTTTGGCATAATGGTTTCATTCTGCTACATGCTAAGTGTTGTCATTTTTTCAATTAGCATTTTCCTGAAATTATGGGAATACAATACAATCATTAAAATCAGGATCGGACTGAATCCACCGCCTTACTGAATTTAGTAGGGTTAGTATTTTACTGGAGGGTTTAATGGGTTTTAATTctgacttatttattatttttgagggGCATTAACAAGCACTATCTGCATTGCCACTTTTGATAGACGTATATCCTGCTGAGTGCATATGATAATGTTACTGTATTTGctatatattttctatatatataaatatatcccTTACAAACATTTGCTGTAAGTCTCATTCGAAACTTTAAAAATGAGACGTGGAACAAACTGATTATGTATTATTGAGTGCTTTGGCTTCAATTGACATTTGGTCAATTTGCTCAATAAAGATATTTGAACTCTTTGAA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048738 cardiac muscle tissue development biological_process
GO:0014809 regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0014819 regulation of skeletal muscle contraction biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0007517 muscle organ development biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0031033 myosin filament organization biological_process
GO:0031034 myosin filament assembly biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0050746 regulation of lipoprotein metabolic process biological_process
GO:0050748 negative regulation of lipoprotein metabolic process biological_process
GO:0071688 striated muscle myosin thick filament assembly biological_process
GO:0071691 cardiac muscle thin filament assembly biological_process
GO:0006500 N-terminal protein palmitoylation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060254 regulation of N-terminal protein palmitoylation biological_process
GO:0060262 negative regulation of N-terminal protein palmitoylation biological_process
GO:0003008 system process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:1903059 regulation of protein lipidation biological_process
GO:1903060 negative regulation of protein lipidation biological_process
GO:0051924 regulation of calcium ion transport biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0044057 regulation of system process biological_process
GO:0014722 regulation of skeletal muscle contraction by calcium ion signaling biological_process
GO:0016043 cellular component organization biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0036379 myofilament cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005861 troponin complex cellular_component
GO:0005576 extracellular region cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005615 extracellular space cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031672 A band cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0031430 M band cellular_component
GO:0150034 distal axon cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0050840 extracellular matrix binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036966 lncRNA downstream 102949 44350054 ~ 44361396 (-) False XLOC_018362
TCONS_00036964 lncRNA downstream 102987 44345987 ~ 44361358 (-) False XLOC_018362
TCONS_00036501 lncRNA downstream 103114 44352134 ~ 44361231 (-) True XLOC_018362
TCONS_00036965 lncRNA downstream 116823 44346749 ~ 44347522 (-) False XLOC_018362
TCONS_00036961 lncRNA downstream 188357 44183605 ~ 44275988 (-) False XLOC_018361
TCONS_00036967 lncRNA upstream 902832 45368645 ~ 45405742 (-) False XLOC_018370
TCONS_00036503 lncRNA upstream 1085698 45551511 ~ 45560420 (-) True XLOC_018371
TCONS_00036158 lncRNA upstream 1321234 45787047 ~ 45796675 (-) False XLOC_018375
TCONS_00036968 lncRNA upstream 1354727 45820540 ~ 45888529 (-) False XLOC_018376
TCONS_00036504 lncRNA upstream 1387001 45852814 ~ 45854934 (-) True XLOC_018377
TCONS_00036137 mRNA downstream 3556 44372745 ~ 44460789 (-) True XLOC_018364
TCONS_00036135 mRNA downstream 373685 43996248 ~ 44090660 (-) True XLOC_018359
TCONS_00036134 mRNA downstream 373697 43996248 ~ 44090648 (-) False XLOC_018359
TCONS_00036132 mRNA downstream 373721 43996041 ~ 44090624 (-) False XLOC_018359
TCONS_00036133 mRNA downstream 409222 43996248 ~ 44055123 (-) False XLOC_018359
TCONS_00036139 mRNA upstream 41854 44507667 ~ 44543639 (-) False XLOC_018366
TCONS_00036140 mRNA upstream 43463 44509276 ~ 44557037 (-) True XLOC_018366
TCONS_00036141 mRNA upstream 101126 44566939 ~ 44576949 (-) False XLOC_018367
TCONS_00036142 mRNA upstream 101172 44566985 ~ 44575103 (-) True XLOC_018367
TCONS_00036143 mRNA upstream 333562 44799375 ~ 45058041 (-) False XLOC_018368
TCONS_00036136 other downstream 115288 44348942 ~ 44349057 (-) True XLOC_018363
TCONS_00036099 other downstream 1381278 43082949 ~ 43083067 (-) True XLOC_018342
TCONS_00036096 other downstream 1384864 43016437 ~ 43079481 (-) False XLOC_018341
TCONS_00036093 other downstream 1496957 42967274 ~ 42967388 (-) True XLOC_018339
TCONS_00036086 other downstream 2059133 42405098 ~ 42405212 (-) True XLOC_018330
TCONS_00036148 other upstream 446400 44912213 ~ 44912331 (-) True XLOC_018369
TCONS_00036178 other upstream 1717374 46183187 ~ 46249185 (-) True XLOC_018394
TCONS_00036182 other upstream 1984665 46450478 ~ 46457256 (-) True XLOC_018396
TCONS_00036189 other upstream 2270869 46736682 ~ 46738314 (-) False XLOC_018401
TCONS_00036196 other upstream 2417547 46883360 ~ 46883487 (-) True XLOC_018405

Expression Profile

//