RNA id: TCONS_00036141


Basic Information

Item Value
RNA id TCONS_00036141
length 915
RNA type mRNA
GC content 0.50
exon number 7
gene id XLOC_018367
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 44566939 ~ 44576949 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGCGGCATGACAAACGAGAGAAACTTACGAGCTGAAAGGACAGTTTTACGACACATTTGAAGCCTTACACTGATGGACAACAGAAGACGTTATGATGAAAAATATTGATTCAAGAGAAAGGCATGAAGATGACACATGGTGTGAAGGTGCACAaaatgaggaagaggaggaggaggaggatgaagaggcAAGCCCTATTAGATCCAGTTTCTCCGTCGAGGACCTGCTCGATGAGGTGGAGAAGATCAGCAGTGTTGCCAGTAGTGGTAAAAAGGTTGAGATTGTGGTGAGACTGTGGAAAAATGGCTTCACGCTGAATGACGAAGACTTGCGCAGTTACACCCAAGAGGAAAACCAAGAGTTCTTGGAGGCCATTAAAAAGGGTGAGCTGCCTCTGGAGCTTGAAGGAAGAGCTGAAGATGAGGAACTAGAAGTCAATGTGGAGGACATGAAGGATGAAGTTTATGTCCCGAAGAAAAAGATTTTTCACCCATTTACAGGCCGAGGTTACAGACTGGGAAGTGTGGCTCCGCGAGTGGTGGCCAGGTCGCGGTCGATACACGAGGACTGTTCTGGTCCTCCTGTCCCAGCCGTGGAGCTGAATGAAGATCTCCCAGTGACCTCCCTGCAGATCTGGCTGGCAGACGGTCGGCGACTGGTGCAGAGGTTTAATCTGTGCCATCGGATCAGCGATGTGCAGCGTTTTGTGGAGCAGGCTCAGATCACGGACACTCCGTTCATCCTGACCACATCGCTGCCGTTCAGAGAGCTGACAGATGAGGCTCAGAGTTTGGAGGAAGCCGACTTGGCAAACGCTGTCATCGTTCAGAGGCCTGTTAACACACATGCTCCATTTGGGCACTCCTGACTGTTCCTTCTTTAAACAGAGACTCAAATATATTGGTTTTGCCCCA

Function

GO:

id name namespace
GO:0000045 autophagosome assembly biological_process
GO:0007030 Golgi organization biological_process
GO:0061025 membrane fusion biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0031468 nuclear envelope reassembly biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0043130 ubiquitin binding molecular_function

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum

ZFIN:

id description
ZDB-GENE-110411-202 Predicted to enable ubiquitin binding activity. Predicted to be involved in several processes, including autophagosome assembly; nuclear membrane reassembly; and proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol and nucleus. Orthologous to human UBXN2A (UBX domain protein 2A).

Ensembl:

ensembl_id ENSDART00000148639

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036502 lncRNA downstream 101126 44464345 ~ 44465813 (-) False XLOC_018365
TCONS_00036966 lncRNA downstream 205543 44350054 ~ 44361396 (-) False XLOC_018362
TCONS_00036964 lncRNA downstream 205581 44345987 ~ 44361358 (-) False XLOC_018362
TCONS_00036967 lncRNA upstream 791696 45368645 ~ 45405742 (-) False XLOC_018370
TCONS_00036503 lncRNA upstream 974562 45551511 ~ 45560420 (-) True XLOC_018371
TCONS_00036158 lncRNA upstream 1210098 45787047 ~ 45796675 (-) False XLOC_018375
TCONS_00036968 lncRNA upstream 1243591 45820540 ~ 45888529 (-) False XLOC_018376
TCONS_00036504 lncRNA upstream 1275865 45852814 ~ 45854934 (-) True XLOC_018377
TCONS_00036140 mRNA downstream 9902 44509276 ~ 44557037 (-) True XLOC_018366
TCONS_00036139 mRNA downstream 23300 44507667 ~ 44543639 (-) False XLOC_018366
TCONS_00036138 mRNA downstream 70694 44464345 ~ 44496245 (-) True XLOC_018365
TCONS_00036137 mRNA downstream 106150 44372745 ~ 44460789 (-) True XLOC_018364
TCONS_00036135 mRNA downstream 476279 43996248 ~ 44090660 (-) True XLOC_018359
TCONS_00036143 mRNA upstream 222426 44799375 ~ 45058041 (-) False XLOC_018368
TCONS_00036144 mRNA upstream 222426 44799375 ~ 45060241 (-) False XLOC_018368
TCONS_00036146 mRNA upstream 222426 44799375 ~ 45062514 (-) False XLOC_018368
TCONS_00036145 mRNA upstream 222426 44799375 ~ 45062514 (-) False XLOC_018368
TCONS_00036147 mRNA upstream 287220 44864169 ~ 45040916 (-) True XLOC_018368
TCONS_00036136 other downstream 217882 44348942 ~ 44349057 (-) True XLOC_018363
TCONS_00036099 other downstream 1483872 43082949 ~ 43083067 (-) True XLOC_018342
TCONS_00036096 other downstream 1487458 43016437 ~ 43079481 (-) False XLOC_018341
TCONS_00036093 other downstream 1599551 42967274 ~ 42967388 (-) True XLOC_018339
TCONS_00036086 other downstream 2161727 42405098 ~ 42405212 (-) True XLOC_018330
TCONS_00036148 other upstream 335264 44912213 ~ 44912331 (-) True XLOC_018369
TCONS_00036178 other upstream 1606238 46183187 ~ 46249185 (-) True XLOC_018394
TCONS_00036182 other upstream 1873529 46450478 ~ 46457256 (-) True XLOC_018396
TCONS_00036189 other upstream 2159733 46736682 ~ 46738314 (-) False XLOC_018401
TCONS_00036196 other upstream 2306411 46883360 ~ 46883487 (-) True XLOC_018405

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_04514094_04517849.mRNA True 1126 mRNA 0.46 6 CI01000029 4513850 ~ 4517849 (-)