RNA id: TCONS_00036147


Basic Information

Item Value
RNA id TCONS_00036147
length 1502
RNA type mRNA
GC content 0.54
exon number 6
gene id XLOC_018368
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 44799375 ~ 45062514 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCCGCCCGCTTACAGCCAAGGGGTGTCCGTCCAGTCTCCTGTCATCGGCGTGACCCCGGCCATCCAGACGCCCATCCCACCACACCATCCGCTCATGACGGCTCACTTCCAGCTTCCTCCGCTCTCTTCCCAACCTCCCGGCAGCCTAGTTCTCAGTCTCCAAAACCAGTCGCCCTACGCCACCAGCCAGCCGCAAATCACCCCATCACCCCTGACGACAGCCGGCCAGGTGATCCACCCCACTCCCCAGAGCGTGGTCGTGGGAAATGGTCACATGACTCACCCTCTCATTCATCCGCCCACTTTGCCTTCCGCCGCGCTGCCATTGTCAAATGGACAAGCGACGACTCTGCCAACTTCTGCCAACCAGGACAGTCCCAATGGCCTTCAAATGCTTCGTACCGTTGGAATGGGGAAGTACGAGTTCACAGACCCGAGCCATCCTAAAGAGATGTTGAAGGAGTTGAACCAGCAGCGCAGAGAGAAAGAGTTTACAGACCTGAAAATTATAGTTGAAGGCAAAGAGTTTGAAGTCCACCAAAATGTTCTAGCTTCCTGCAGCTTGTATTTCAAGGACCTGGTGAAAAGGTCTTCAAGAGAGACGGGCAGTGGTGAGAAGCTGGAGCTCAACATGACCAACATCAGTGCGGACgtgctggagctgctgcttgagtTCGTCTACACTGGCTCTCTGGTCATCCACTCGGCCAACGCCAAAACCCTGCTGGAGGCCGCAAACAAGTTCCAGTTTAACACCTTCTGCAAAGTCTGCGTGTCTTTCTTAGAAAAGCAGCTGACTGCAGCAAACTGCCTGGGGGTTCTGGCTATGGCGGAGGCCATGTGCTGCACGGAGCTACACAATATGGCCAAAGCCTTCGCACTGCAGAACTTCCCTGATGTGGCAGGACAAGATGAGATCCTCAGCATCTCCAAAGAAGACCTGATCAACTATCTGTCCAACGACAGCCTGAACACCAAGGCAGAGGAGCTGGTTTATGAGACTGTCATCAAATGGATCAAGAAGGACCCCATCAACAGAGTACAGCACATATCAGAGTTGCTGGCTGTGGTCAGGCTTCCATTTATCCACCCCAGTTACCTGCTGAACGTGGTGGACAATGAGGAGTTGATTAAATCGTCGGAGGCTTGCCGAGACCTGGTGAATGAGGCCAAACGATACCACATGCTGCCTCACGCGCGGCAGGAGATGCAGACACCCAGGACGAGGCCCAGACTCTCTGCAGGTGTAGCAGAGGTTATCGTGTTGGTCGGAGGACGGCAGGCCATCGGTATGAACCAGCGCTGTCTCACCGCAGTCACATGTTTTAATCCACAAAATGGGAAATGGTATCCACTGGCCAGCGTCCCTTTCTACGACCGCGAGTTCTTCAGCGTCATCTCCGCCGGGGACAATATTTATCTGTCAGGTACGTCAGGGAAGCTCGTATATCAAGTGTTAACACTGGGTGGGCACTTTACACGCTTTCCAGATGCGCTTTC

Function

GO: NA

KEGG:

id description
ko04121 Ubiquitin system

Ensembl:

ensembl_id ENSDART00000190001

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036502 lncRNA downstream 398356 44464345 ~ 44465813 (-) False XLOC_018365
TCONS_00036966 lncRNA downstream 502773 44350054 ~ 44361396 (-) False XLOC_018362
TCONS_00036964 lncRNA downstream 502811 44345987 ~ 44361358 (-) False XLOC_018362
TCONS_00036967 lncRNA upstream 327729 45368645 ~ 45405742 (-) False XLOC_018370
TCONS_00036503 lncRNA upstream 510595 45551511 ~ 45560420 (-) True XLOC_018371
TCONS_00036158 lncRNA upstream 746131 45787047 ~ 45796675 (-) False XLOC_018375
TCONS_00036968 lncRNA upstream 779624 45820540 ~ 45888529 (-) False XLOC_018376
TCONS_00036504 lncRNA upstream 811898 45852814 ~ 45854934 (-) True XLOC_018377
TCONS_00036141 mRNA downstream 287220 44566939 ~ 44576949 (-) False XLOC_018367
TCONS_00036142 mRNA downstream 289066 44566985 ~ 44575103 (-) True XLOC_018367
TCONS_00036140 mRNA downstream 307132 44509276 ~ 44557037 (-) True XLOC_018366
TCONS_00036139 mRNA downstream 320530 44507667 ~ 44543639 (-) False XLOC_018366
TCONS_00036138 mRNA downstream 367924 44464345 ~ 44496245 (-) True XLOC_018365
TCONS_00036149 mRNA upstream 363740 45404656 ~ 45423498 (-) True XLOC_018370
TCONS_00036150 mRNA upstream 602907 45643823 ~ 45661049 (-) False XLOC_018372
TCONS_00036151 mRNA upstream 610221 45651137 ~ 45661053 (-) True XLOC_018372
TCONS_00036152 mRNA upstream 628260 45669176 ~ 45709990 (-) False XLOC_018373
TCONS_00036153 mRNA upstream 628281 45669197 ~ 45708962 (-) False XLOC_018373
TCONS_00036136 other downstream 515112 44348942 ~ 44349057 (-) True XLOC_018363
TCONS_00036099 other downstream 1781102 43082949 ~ 43083067 (-) True XLOC_018342
TCONS_00036096 other downstream 1784688 43016437 ~ 43079481 (-) False XLOC_018341
TCONS_00036093 other downstream 1896781 42967274 ~ 42967388 (-) True XLOC_018339
TCONS_00036086 other downstream 2458957 42405098 ~ 42405212 (-) True XLOC_018330
TCONS_00036178 other upstream 1142271 46183187 ~ 46249185 (-) True XLOC_018394
TCONS_00036182 other upstream 1409562 46450478 ~ 46457256 (-) True XLOC_018396
TCONS_00036189 other upstream 1695766 46736682 ~ 46738314 (-) False XLOC_018401
TCONS_00036196 other upstream 1842444 46883360 ~ 46883487 (-) True XLOC_018405
TCONS_00036200 other upstream 2037063 47077979 ~ 47078093 (-) True XLOC_018409

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00004124 True 794 mRNA 0.52 4 CM030121.1 34666392 ~ 34685790 (+)