RNA id: TCONS_00036156


Basic Information

Item Value
RNA id TCONS_00036156
length 2566
RNA type mRNA
GC content 0.45
exon number 15
gene id XLOC_018375
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 45775935 ~ 45812152 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCGGGAACTCACTTAGTTGTGTTTCAGGCAGAATCATGGCCTCGGCCGGTGAACATGGACACACCTGGGAACTCAGCATTCAGGTGGACCAGCGGGAGGGAGACGAGGGCATGAGGTTTAAACTGCGGGTCAAAGGGGATCTGCACGTTGGCGGACTCATGCTCAAACTGGTGGAGAAGATCaaggctCCTCAGGACTGGTCAGATCATGCCATCTGGTGGGAGCAGAAGAGCTGCTGGCTGCTGAAGACTCACTGGACTCTGGATAAATACGGGATCCAGGCGAACGCTGACCTGCGCTACACTCCTCAGCACAAGTCCCTTTGCATTCAGCTGCCCAACATGAAGAACATCAAACTGCCGGTCACTTTCTCCGGCGTTGTCTTCAGAGCTGTGGCCGAGATCTGTAAAACACTCAACATTAGAAGAACCGAAGAACTTTCTCTCCTGAAACCAACAGATGAAcccaagaagaaaaagaaaaaagacaaaggCACAGATTTAGCCACTGATGAGATATTAACCATGGACATAACTGGAGGAGCTCTGGGTATGTACAGTAAAACCATGACCCCGATCTATGACCCGGACAGCGGCTCACCTGTATCCTCCACCAGTCTGTGGTACGGTGGGAGTCCGCTGACCGCCTGCCAACCAAACTTGCCACCAGAGGAGCTCGCCAAACTGTACAAACCTCTAACCATGGAGGATAAAGCAGCCATTAATGCTGGATGGCTGGATTCGTCTCGTTCGCTGATGGAGCAGGGGATTCAGGAAAATGACAGACTCCTGCTGCGATTCAAGTACCACTGCTTCTTTGACCTCAACCCAAAGTATGATGCGGTGAGAATCACGCAGCTTTATGAACAGGCCAGATGGGCAATCCTGCTGGAGGAGATCGACTGCACTGAAGAGGAGATGCTCATGTTTGCATCCCTACAGTATCACATCTGTAAACTGACCTTATCGACGGAGCCACTGGACAATTCAGATGAGAAAGAGGTTGATGAAGTGGAGGCTGCGCTTTCAAACTTAGAGACTCATCTGGAAGGACGAAACGCTGATAAGATCCTGGAAGATATAACGGACATTCCAAAATTGGAGGATACACTCAAACTGTTCAGGCCCAAGCGACTGACGTTAAAGCCGTATAAGGAGTACTGGTTTGTTTTTAGGGACACCaccatttcttattttaaaaacaaagattcTGCCAATAAAGAGCCCATTGAGCAGCTTCATCTACGAGGATGTGAGGTCATTCCTGATGTCAATGTGACCGAGAGGAAATTCGGCCTCAAGCTATTATTGCCCGCAGCTGATGGGATGAACGAGGTTTACATTCGCTGCGAAAATGAAACTCAGTACGCCAAGTGGAAAgctgcctgtattttggcatccAAAGGCAAGACGATGGCCTACAGCTCGTACCGCACCGAGGTGAAGAACATCCAGTCGTTCCTGCAGATGAAGAGTCTCGCTCCTCCTCCCGGTCAAGCGGCACCTGATGTAGAGTCCATGGAGATGAACCCCGAGTGCTTTGTTTCTCCGCGATATGCTAAGAAGTTCAAGACCAAACAGCTGACCACACGAATCTTGGAGGCCCATCACAATATTTCCCAGCTTTCCCTTATGGAGGCTAAAATGCGTTTCATTCAAGCATGGCAGTCTCTGCCCGATTTTGGCATCAAGTACTATATTGTCAGATTCAGAGGAAGCAAGAAAGATGAGCTGTTAGGCATCTCCTACAACAGGTTGATCCGCATCGACATGTCCACTGGTCTACCGGTGACCACCTGGAGGTTCTCCAACATGAAACAGTGGAACGTCAACTGGGAGATTCGACAGGTGACCATTGAGTTTGACCAGAGTGTGTCGATTGCGTTTTCCTGCCAGAGCTGCGACTGTAAGGTGGTTCACGAGTATATCGGAGGATACATTTTCCTCTCGACGCGCTCAAAAGACCAGAATGAAACTCTAGATGAAGAACTCTTCCACAAACTCACAGGAGGACAAgactgacctcagatcagcatGACCAtttaatatagtgtttttcttcATCTTTGCCTAAGTCCTTTTGTATTTGTAATAAGGCAAGTTAACACAAAAGAGAACATAACTCCATGTTTGCAtctaaaacaatacatttgttgTTCTCTCTTGACATTTTTAGAAGTTGTTGTTGGTGTCTTTAATGTACATAATTTACAACAAAagtattgattgattggttgattgattgattgattgattgattgattgattgattgattgattgattgattgattgattgattgattgattgattgattgactgactgactgactgactgactgactgtatgGTCGATTGgatgactggttggttggttgatttattgattgattagttgtttaattgattagttggttggttgattgttggttgattgattaaatgattgaTCGATTGActggttagttgattgattgattgactgactggttgattgattggttgattgataaattgattgattgattgattgattaattgactggttggttagttgattgattgat

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0005925 focal adhesion cellular_component
GO:0030055 cell-substrate junction cellular_component
GO:0005178 integrin binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-030131-3264 Predicted to enable integrin binding activity. Predicted to be involved in cell-matrix adhesion. Predicted to act upstream of or within integrin-mediated signaling pathway. Predicted to be active in focal adhesion. Is expressed in several structures, including intestinal epithelium; median fin fold; non neural ectoderm; pectoral fin bud; and pectoral fin fold. Human ortholog(s) of this gene implicated in Kindler syndrome; telangiectasis; and vesiculobullous skin disease. Orthologous to human FERMT1 (FERM domain containing kindlin 1).

Ensembl:

ensembl_id ENSDART00000147897

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036503 lncRNA downstream 215515 45551511 ~ 45560420 (-) True XLOC_018371
TCONS_00036967 lncRNA downstream 370193 45368645 ~ 45405742 (-) False XLOC_018370
TCONS_00036502 lncRNA downstream 1310122 44464345 ~ 44465813 (-) False XLOC_018365
TCONS_00036966 lncRNA downstream 1414539 44350054 ~ 44361396 (-) False XLOC_018362
TCONS_00036968 lncRNA upstream 8396 45820540 ~ 45888529 (-) False XLOC_018376
TCONS_00036504 lncRNA upstream 40670 45852814 ~ 45854934 (-) True XLOC_018377
TCONS_00036969 lncRNA upstream 50071 45862215 ~ 45888508 (-) False XLOC_018376
TCONS_00036505 lncRNA upstream 75217 45887361 ~ 45891765 (-) True XLOC_018376
TCONS_00036506 lncRNA upstream 95003 45907147 ~ 45983435 (-) False XLOC_018378
TCONS_00036155 mRNA downstream 3629 45754323 ~ 45772306 (-) True XLOC_018374
TCONS_00036154 mRNA downstream 53040 45706183 ~ 45722895 (-) True XLOC_018373
TCONS_00036152 mRNA downstream 65945 45669176 ~ 45709990 (-) False XLOC_018373
TCONS_00036153 mRNA downstream 66973 45669197 ~ 45708962 (-) False XLOC_018373
TCONS_00036151 mRNA downstream 114882 45651137 ~ 45661053 (-) True XLOC_018372
TCONS_00036163 mRNA upstream 233591 46045735 ~ 46046758 (-) True XLOC_018380
TCONS_00036164 mRNA upstream 240541 46052685 ~ 46053720 (-) True XLOC_018381
TCONS_00036165 mRNA upstream 248491 46060635 ~ 46061650 (-) True XLOC_018382
TCONS_00036166 mRNA upstream 256454 46068598 ~ 46069609 (-) True XLOC_018383
TCONS_00036167 mRNA upstream 261536 46073680 ~ 46074694 (-) True XLOC_018384
TCONS_00036148 other downstream 863604 44912213 ~ 44912331 (-) True XLOC_018369
TCONS_00036136 other downstream 1426878 44348942 ~ 44349057 (-) True XLOC_018363
TCONS_00036099 other downstream 2692868 43082949 ~ 43083067 (-) True XLOC_018342
TCONS_00036096 other downstream 2696454 43016437 ~ 43079481 (-) False XLOC_018341
TCONS_00036093 other downstream 2808547 42967274 ~ 42967388 (-) True XLOC_018339
TCONS_00036178 other upstream 371043 46183187 ~ 46249185 (-) True XLOC_018394
TCONS_00036182 other upstream 638334 46450478 ~ 46457256 (-) True XLOC_018396
TCONS_00036189 other upstream 924538 46736682 ~ 46738314 (-) False XLOC_018401
TCONS_00036196 other upstream 1071216 46883360 ~ 46883487 (-) True XLOC_018405
TCONS_00036200 other upstream 1265835 47077979 ~ 47078093 (-) True XLOC_018409

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000029_05055841_05068089.mRNA True 2363 mRNA 0.46 13 CI01000029 5055385 ~ 5068127 (-)