RNA id: TCONS_00036968


Basic Information

Item Value
RNA id TCONS_00036968
length 428
lncRNA type antisense_over
GC content 0.46
exon number 4
gene id XLOC_018376
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 45820540 ~ 45891765 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAGTAAACTATGGATTCCCTATGATGAGGGAAGTCAGACTGAAGCCATCACTATAAGACAAAACCATGGACGTCTGCCTAGCACATGTGTAGAAGGAATCCGCATATGAAAACCCCTCATCGGTCGCAGAACCTTTGATCCGTAACTTGGAAGAGCGATGACCTTTGACTATTCCTGAATTTAACATTGGCGTTTGGAGCATCGTGATGGAAAATGCTGCATTTGTTTGTGTCATAAACAAACCCCAGATGCTGGAGCAAACACCTCTTTGATCCGGGTTTGGGACCTCCCTCAATCTGCTGGGACCCCTTCCTTCCACCTGACGCTCAGAGACCACCTTACAGACAGTCTGTGCTGAATCCTGCACAGAATATTGTGAATGCtgttaaaaatacggAACCCTGTCGTcttggtcaacttctctctg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036158 lncRNA downstream 23865 45787047 ~ 45796675 (-) False XLOC_018375
TCONS_00036503 lncRNA downstream 260120 45551511 ~ 45560420 (-) True XLOC_018371
TCONS_00036967 lncRNA downstream 414798 45368645 ~ 45405742 (-) False XLOC_018370
TCONS_00036502 lncRNA downstream 1354727 44464345 ~ 44465813 (-) False XLOC_018365
TCONS_00036966 lncRNA downstream 1459144 44350054 ~ 44361396 (-) False XLOC_018362
TCONS_00036506 lncRNA upstream 18618 45907147 ~ 45983435 (-) False XLOC_018378
TCONS_00036970 lncRNA upstream 18618 45907147 ~ 45983635 (-) False XLOC_018378
TCONS_00036971 lncRNA upstream 18618 45907147 ~ 45983639 (-) False XLOC_018378
TCONS_00036973 lncRNA upstream 18618 45907147 ~ 45983660 (-) False XLOC_018378
TCONS_00036972 lncRNA upstream 18618 45907147 ~ 45983660 (-) False XLOC_018378
TCONS_00036159 mRNA downstream 8388 45801610 ~ 45812152 (-) True XLOC_018375
TCONS_00036156 mRNA downstream 8396 45775935 ~ 45812144 (-) False XLOC_018375
TCONS_00036157 mRNA downstream 12558 45776479 ~ 45807982 (-) False XLOC_018375
TCONS_00036155 mRNA downstream 48234 45754323 ~ 45772306 (-) True XLOC_018374
TCONS_00036154 mRNA downstream 97645 45706183 ~ 45722895 (-) True XLOC_018373
TCONS_00036163 mRNA upstream 157206 46045735 ~ 46046758 (-) True XLOC_018380
TCONS_00036164 mRNA upstream 164156 46052685 ~ 46053720 (-) True XLOC_018381
TCONS_00036165 mRNA upstream 172106 46060635 ~ 46061650 (-) True XLOC_018382
TCONS_00036166 mRNA upstream 180069 46068598 ~ 46069609 (-) True XLOC_018383
TCONS_00036167 mRNA upstream 185151 46073680 ~ 46074694 (-) True XLOC_018384
TCONS_00036148 other downstream 908209 44912213 ~ 44912331 (-) True XLOC_018369
TCONS_00036136 other downstream 1471483 44348942 ~ 44349057 (-) True XLOC_018363
TCONS_00036099 other downstream 2737473 43082949 ~ 43083067 (-) True XLOC_018342
TCONS_00036096 other downstream 2741059 43016437 ~ 43079481 (-) False XLOC_018341
TCONS_00036093 other downstream 2853152 42967274 ~ 42967388 (-) True XLOC_018339
TCONS_00036178 other upstream 294658 46183187 ~ 46249185 (-) True XLOC_018394
TCONS_00036182 other upstream 561949 46450478 ~ 46457256 (-) True XLOC_018396
TCONS_00036189 other upstream 848153 46736682 ~ 46738314 (-) False XLOC_018401
TCONS_00036196 other upstream 994831 46883360 ~ 46883487 (-) True XLOC_018405
TCONS_00036200 other upstream 1189450 47077979 ~ 47078093 (-) True XLOC_018409

Expression Profile

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