RNA id: TCONS_00036972


Basic Information

Item Value
RNA id TCONS_00036972
length 2159
lncRNA type inter_gene
GC content 0.47
exon number 7
gene id XLOC_018378
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 45907147 ~ 45983660 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttcaacatcaaaagtcgactgggcagagatcaacatcccataagTGATGAAGATATGCAGTTCACGAAGTGACCAGAAGGTGTCGGTGTAAACCTGCAGGAGAGCCAGAGAcgcttcattcacacacatgacTGGAGCTTCTCTGCGTTTACTTCCCATGTGCGTGCAACTGCAACTGACGCTGAGAGATACACCTGCTTTTTATTAGAGCCGTAATCCAACTCCAGTCGCTCTTGAGGAAGCAGAGAAGAGATAGAGGTGAAGGGGCCTCGTGCCCAGTGAGGAGCCCTGGCAGCGCTGCAGAACGGGATATTTAGGCTGTTAGAGCACCAGGAAGCTCTGAGTCCCATTTTGGGTGGTGGTGAAGATACAGCAGGTCCACATCAACATGAGACACAGGCAGCCTCTGTGACGGCCAGCTGCGCGTCTGGAATACAAGTCATCTAATTACGTGGAAAAGATGGCCACCGACCGCCAGCAAACAAACAGAGTCCCTCTCACCTGTCGCCTGACCTACTTTACCATGGAAAACACTGCTGGGCTGCTGTAAAGTCGGGAGATGACATTCCCGCTTGTTTTTGGGGCTTGGAGGCCTGGTGTAGCACAGTGGGTGGGTTCAGCTCTCCGGCTCTGAAGTCATGCGAGGAAGAGGTGGAGGAGACGGGTGGAGATGCCACGCTTTTATGACGCCTTGCATCATGGCTGGAGTGGAAAGCTGCCATGACATCAGCCAGAGGACAGCAGGATTCTGGGCCTGGGACAGGAAGTGACTCACAGGAAGTGAGCTGAGCAACATGTGGATGCGTGGCTGTTTGATGTGTTTTGAGCTGCTCCACAGACGCTCCGTTTCCAAGTGTGCTGGACGTCATCGAACGGACGCTTCACAGAAAGGCGTAGTGAGCCTCCTCTCAAATTAGCGGGCCGCTGTGGGATAACAAAGGCCTCGGGATCCGCCGCAGACCCTGTCCGAACTTCAGCGTCCCTCTGGCACGAGTCCAGCAGTCGTATCCCAGCTGCCCTCATCAAAGGTACGCGCTGCATAGTTTCCAAACGCCGACCGCCAGAAATCTGGAAATCGGATTCTGATGCTGCATGAATCTGGTCGGAGGAACTGCAGATACTTTCGGTGTGGTTTGCACTCAGTGAGACGAATCAAATAACTGTTCCCTGCCAGACTGAATCCCTCCCAGCCGATGCCTAGACTGGTGCTAGTAAAGCCATATGCTTGAATTTTCCCAAGTTTGATACAGTAAAACAAACTGTTTTACTTGCCAAGGTGCATCTTCAGTCAGGTATTTTAAAGTATagctgaaaacaaaacttcagcTCAGACTGCATTTTTTACATAAAGATtttcattttagacattttttattaaatcatcaTTTTACTTTATTACATCATTTTATTATATGTAAATCAATTAATGAAACATTGGAAACTACCTTAATGGGAAAGTTGGCCATCCAGTGACCTGGTTCTGTCTTGCTGTCCAGTAGATTTCAAACTCTATAGCTTAAATAAAATAGATGAGCACTTttacatgagtagcagtgcgttATGCCTGTATATCAGcgctggtgggaggcatgcattgCGGCCTTGTGCCTTACGGCTGTTTTACACCACAAGCGTAAAaagcgcgtgagcagagcgtgagcagcacgtgttttttcggcgtccatgttaacaggtTAGAGCTTTCATaacgcacgcagcagcagcgcgtcagagcgaggcgtgagcgtcgccgaagcagcagtgcagcgatagtttcggcgctgggtctatttttgccacgctgctcacgctcaattaaagtgacagtgcattgataatgaccaaaacacaatgaatgatagtaaaaagtagcaattttacccaataaatgcattaataatgtcaactgatttagatatagtcaatcaaatgaacttaaacgattaaaaacggcaacaaacatttatttagcgctgaactacaaaaccaaatgtaaaacaattattattattattaattttgtttaagttgcacgctagtgtttcaggagaggggaaatagaatatttaggggagttgtagtccatagtgtagtgtattgtgggtagtgtagtgcgacacgcatgctggattatgtgagctcgctgtgttctgtgca

Function

GO:

id name namespace
GO:0090085 regulation of protein deubiquitination biological_process
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036505 lncRNA downstream 15382 45887361 ~ 45891765 (-) True XLOC_018376
TCONS_00036968 lncRNA downstream 18618 45820540 ~ 45888529 (-) False XLOC_018376
TCONS_00036969 lncRNA downstream 18639 45862215 ~ 45888508 (-) False XLOC_018376
TCONS_00036504 lncRNA downstream 52213 45852814 ~ 45854934 (-) True XLOC_018377
TCONS_00036158 lncRNA downstream 110472 45787047 ~ 45796675 (-) False XLOC_018375
TCONS_00036974 lncRNA upstream 58661 46042321 ~ 46042988 (-) True XLOC_018379
TCONS_00036975 lncRNA upstream 162156 46145816 ~ 46146728 (-) True XLOC_018391
TCONS_00036976 lncRNA upstream 170580 46154240 ~ 46155152 (-) True XLOC_018392
TCONS_00036509 lncRNA upstream 173969 46157629 ~ 46159156 (-) False XLOC_018393
TCONS_00036977 lncRNA upstream 180733 46164393 ~ 46165422 (-) False XLOC_018394
TCONS_00036159 mRNA downstream 94995 45801610 ~ 45812152 (-) True XLOC_018375
TCONS_00036156 mRNA downstream 95003 45775935 ~ 45812144 (-) False XLOC_018375
TCONS_00036157 mRNA downstream 99165 45776479 ~ 45807982 (-) False XLOC_018375
TCONS_00036155 mRNA downstream 134841 45754323 ~ 45772306 (-) True XLOC_018374
TCONS_00036154 mRNA downstream 184252 45706183 ~ 45722895 (-) True XLOC_018373
TCONS_00036163 mRNA upstream 62075 46045735 ~ 46046758 (-) True XLOC_018380
TCONS_00036164 mRNA upstream 69025 46052685 ~ 46053720 (-) True XLOC_018381
TCONS_00036165 mRNA upstream 76975 46060635 ~ 46061650 (-) True XLOC_018382
TCONS_00036166 mRNA upstream 84938 46068598 ~ 46069609 (-) True XLOC_018383
TCONS_00036167 mRNA upstream 90020 46073680 ~ 46074694 (-) True XLOC_018384
TCONS_00036148 other downstream 994816 44912213 ~ 44912331 (-) True XLOC_018369
TCONS_00036136 other downstream 1558090 44348942 ~ 44349057 (-) True XLOC_018363
TCONS_00036099 other downstream 2824080 43082949 ~ 43083067 (-) True XLOC_018342
TCONS_00036096 other downstream 2827666 43016437 ~ 43079481 (-) False XLOC_018341
TCONS_00036093 other downstream 2939759 42967274 ~ 42967388 (-) True XLOC_018339
TCONS_00036178 other upstream 199527 46183187 ~ 46249185 (-) True XLOC_018394
TCONS_00036182 other upstream 466818 46450478 ~ 46457256 (-) True XLOC_018396
TCONS_00036189 other upstream 753022 46736682 ~ 46738314 (-) False XLOC_018401
TCONS_00036196 other upstream 899700 46883360 ~ 46883487 (-) True XLOC_018405
TCONS_00036200 other upstream 1094319 47077979 ~ 47078093 (-) True XLOC_018409

Expression Profile

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