RNA id: TCONS_00003638


Basic Information

Item Value
RNA id TCONS_00003638
length 1948
RNA type mRNA
GC content 0.49
exon number 10
gene id XLOC_001825
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 3111004 ~ 3129887 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cttagtttaataagttataatgaactaaaaacatatgttggcatgacaaatgtatcatataaatttttacaatgtagttatTAGAAATCAACTATTGTCGGTGCCAATGGTGTAGAGGAAACTGTACTGACACATGCGTTCTAGtgttcacggcgacccgagtttgattcccgctTCAAGGTCCTATcccaatccttcccctctctctgctccccacactttcctgtcaattctctcttctgtcctgtcaaataaatgttaaggtaataaaagaaatcagttattaaaactattatatttaaaaatctgttgAAAATCTCTGATAAGCAACATttggaaaatacattttaaagacttcaaatattaaatcattttgacttcagctgcacATCTTAAAAGTGATTTGCTATTGGGATGAATTAGTAATGGTGGCTGTGAATAAGAGGCTATGTAGAGGTTATAAAGTAGAGTGCAAAGCGCTGGACTATGGCGGCAGGTCTCAAGGACAAGCTGGACGACAGACACGGGTTATGACCTGGCACTCACATGGAAGAGGATTGGCCATCAGGTCGGCTTCTAATCCCATATCCTGGGAGGAGCGCCAGATTCCCGCACAGACTGTGTGCTTCCTGACACTGAGGAGACTCTACAGTGCTGACCCCATCTGAACTTTTTGAGGAGAATCGGTGTGAAGATGGCTGGTTCAATTGGCAAGATGATGTCGAGCCGCACCACTGGCCTGCTCATGGCAAGCCTCGGAGCTGGTGCTTTGGCGACCGGATATATGATGAGTGACAGTGCTGCAATCTCTGCGGACGAGAAGAGGAAACTCTACCCTCCCAGTGCTGACTTCCCTGACCTTCGCAAGCACAACAACTGCATGGCGAGTGCGCTGACCCCGGCCATCTATGCCAAACTGAGGGACAAACTCACTCCCAACAACTGGACTCTTGACCAGTGCATTCAGACTGGTGTGGACAACCCTGGTCATCCCTTCATCAAGACTGTTGGAATGGTCGCTGGTGATGAGGAGAGCTATGAGGTGTTTGCTGAAATCTTTGATCCTGTAATCAAGGACAGACACAATGGCTATGACCCAAGAAACATGAAGCATCCCACTGACCTGGATGCCAGCAAGCTCCATTCAGGCATGTTTGATGAACACTACGTCCTGTCCTCCCGTGTGCGCACAGGCCGCAGCATCCGTGGCCTCAGCCTTCCCCCTGCCTGTAGCCGCGCAGAGCGTCGTGAAGTGGAAAGGGTGGTAATCCAGGCCTTAGCTGGACTGAAGGGAGACCTCTCTGGACGTTACTACAGCCTGACTGAAATGACTGACCATGAGCAGCAGAGACTCATTGATGACCACTTCCTGTTTGACAAACCTGTTTCCCCCTTGTTGACTTGCGCCTTTATGGCCCGCGACTGGCCAGATGCAAGAGGCATCTGGCACAACAATGAGAAGACCTTCCTGATATGGGTCAATGAGGAAGACCACACCCGTGTCATCTCCATGGAGAAGGGTGGCAACATGAAAAGGGTGTTTGAGAGGTTCTGCAGAGGACTCAAACAGGTGGAACACTTGATTCAGGAGAGGGGCTGGGAGTTCATGTGGAATGAACGTCTTGGCTACGTCTTGACCTGCCCATCCAACCTGGGCACCGGCCTCAGGGCTGGAGTACACGTCCGCTTGCCAAAGCTCAGCAAGGACCCTCGCTTTGGCAAGATCCTGGATAACCTGCGGCTGCAAAAGCGTGGCACTGGAGGTGTGGATACAGCTGCGGTGGGCGATACCTTCGACATCTCAAACCTTGACCGCCTGGGCAAATCCGAGGTGGAACTGGTGCAGCTGGTGGTTGATGGGGTCAACTACCTCATAGAGTGTGAAAAGAGGCTGGAGAAGGGCCAGGATATCAAGGTCCCCGCTCCTTTACAGCAGTTTAAGAAGTGA

Function

GO:

id name namespace
GO:0046314 phosphocreatine biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005739 mitochondrion cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0004111 creatine kinase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5717 Predicted to enable creatine kinase activity. Predicted to be involved in phosphocreatine biosynthetic process. Predicted to act upstream of or within phosphorylation. Predicted to be active in mitochondrion. Is expressed in myotome and retina. Orthologous to human CKMT2 (creatine kinase, mitochondrial 2).

Ensembl:

ensembl_id ENSDART00000101449

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005670 lncRNA upstream 131500 2977535 ~ 2979504 (+) True XLOC_001823
TCONS_00005809 lncRNA upstream 606962 2499533 ~ 2504042 (+) True XLOC_001807
TCONS_00005808 lncRNA upstream 673096 2402308 ~ 2437908 (+) True XLOC_001806
TCONS_00005807 lncRNA upstream 706226 2402308 ~ 2404778 (+) False XLOC_001806
TCONS_00003603 lncRNA upstream 1119536 1982550 ~ 1991468 (+) True XLOC_001804
TCONS_00005810 lncRNA downstream 132691 3262578 ~ 3269818 (+) True XLOC_001827
TCONS_00005671 lncRNA downstream 169997 3299884 ~ 3312438 (+) True XLOC_001828
TCONS_00005672 lncRNA downstream 206968 3336855 ~ 3341616 (+) True XLOC_001829
TCONS_00005811 lncRNA downstream 727180 3857067 ~ 3857885 (+) True XLOC_001834
TCONS_00005812 lncRNA downstream 1159818 4289705 ~ 4299850 (+) True XLOC_001839
TCONS_00003636 mRNA upstream 4242 3049636 ~ 3106762 (+) False XLOC_001824
TCONS_00003637 mRNA upstream 4242 3049636 ~ 3106762 (+) False XLOC_001824
TCONS_00003635 mRNA upstream 4242 3049636 ~ 3106762 (+) False XLOC_001824
TCONS_00003634 mRNA upstream 4242 3049636 ~ 3106762 (+) True XLOC_001824
TCONS_00003632 mRNA upstream 84686 2981090 ~ 3026318 (+) False XLOC_001822
TCONS_00003642 mRNA downstream 15820 3145707 ~ 3155957 (+) False XLOC_001826
TCONS_00003643 mRNA downstream 24086 3153973 ~ 3155668 (+) True XLOC_001826
TCONS_00003644 mRNA downstream 169942 3299829 ~ 3322338 (+) False XLOC_001828
TCONS_00003645 mRNA downstream 206885 3336772 ~ 3359189 (+) False XLOC_001829
TCONS_00003647 mRNA downstream 298307 3428194 ~ 3452675 (+) False XLOC_001831
TCONS_00003633 other upstream 84481 2985044 ~ 3026523 (+) True XLOC_001822
TCONS_00003616 other upstream 422323 2688565 ~ 2688681 (+) True XLOC_001815
TCONS_00003605 other upstream 843647 2175583 ~ 2267357 (+) False XLOC_001805
TCONS_00003597 other upstream 1445966 1664922 ~ 1665038 (+) True XLOC_001797
TCONS_00003590 other upstream 2305645 805244 ~ 805359 (+) True XLOC_001790
TCONS_00003646 other downstream 278896 3408783 ~ 3408900 (+) True XLOC_001830
TCONS_00003658 other downstream 1363390 4493277 ~ 4493358 (+) True XLOC_001842
TCONS_00003668 other downstream 1856163 4986050 ~ 4987483 (+) True XLOC_001850
TCONS_00003675 other downstream 2005955 5135842 ~ 5147582 (+) True XLOC_001854
TCONS_00003679 other downstream 2021462 5151349 ~ 5152401 (+) True XLOC_001855

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000178_00984683_00990281.mRNA True 1547 mRNA 0.52 10 CI01000178 984683 ~ 990385 (+)